RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 GPC3P51654 580 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 CLCN4P51793 760 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 LETM2Q2VYF4 491 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 DDX53Q86TM3 631 aaKnown RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 CCDC82Q8N4S0 544 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 TBC1D17Q9HA65 648 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 RIC8AQ9NPQ8 531 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 CA14Q9ULX7 337 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 AKT3Q9Y243 479 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 RBM19Q9Y4C8 960 aaKnown RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 MAFBQ9Y5Q3 323 aaPredicted RBP11.25□□□□□ -0.61
TPM1-225ENST00000560679 CHD8Q9HCK8 2581 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 CNTNAP5Q8WYK1 1306 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 CHD6Q8TD26 2715 aa11.25□□□□□ -0.61
TPM1-225ENST00000560679 PATJQ8NI35 1801 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 POTEMA6NI47 508 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 MEIS3P2A8K0S8 358 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 PRC1O43663 620 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 CSDE1O75534 798 aaKnown RBP11.24□□□□□ -0.61
TPM1-225ENST00000560679 DCNP07585 359 aaKnown RBP11.24□□□□□ -0.61
TPM1-225ENST00000560679 GALTP07902 379 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 SP9P0CG40 484 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 GLULP15104 373 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 ZSCAN20P17040 1043 aaPredicted RBP11.24□□□□□ -0.61
TPM1-225ENST00000560679 SLC11A1P49279 550 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 CLK2P49760 499 aaKnown RBP11.24□□□□□ -0.61
TPM1-225ENST00000560679 GIT2Q14161 759 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 MIS18BP1Q6P0N0 1132 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 POTEGQ6S5H5 508 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 NIPA1Q7RTP0 329 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 TRMT1LQ7Z2T5 733 aaKnown RBP11.24□□□□□ -0.61
TPM1-225ENST00000560679 CKAP2LQ8IYA6 745 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 MAML2Q8IZL2 1156 aaPredicted RBP11.24□□□□□ -0.61
TPM1-225ENST00000560679 RUBCNQ92622 972 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 LPPQ93052 612 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 KLHL5Q96PQ7 755 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 NRDE2Q9H7Z3 1164 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 TBC1D13Q9NVG8 400 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 IGSF9Q9P2J2 1179 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 WNT16Q9UBV4 365 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 DNAJB4Q9UDY4 337 aa11.24□□□□□ -0.61
TPM1-225ENST00000560679 CACNA1IQ9P0X4 2223 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 IPO5O00410 1097 aaKnown RBP11.23□□□□□ -0.61
TPM1-225ENST00000560679 ZNF862O60290 1169 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 LILRB3O75022 631 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 CNPP09543 421 aaKnown RBP11.23□□□□□ -0.61
TPM1-225ENST00000560679 PHKA2P46019 1235 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 NAPAP54920 295 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 DRP2Q13474 957 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 BMS1Q14692 1282 aaKnown RBP11.23□□□□□ -0.61
TPM1-225ENST00000560679 RSPO4Q2I0M5 234 aaPredicted RBP11.23□□□□□ -0.61
TPM1-225ENST00000560679 LONRF3Q496Y0 759 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 SPECC1Q5M775 1068 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 EFCAB12Q6NXP0 572 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 NFXL1Q6ZNB6 911 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 C15orf39Q6ZRI6 1047 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 PPFIBP1Q86W92 1011 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 PLA2G4DQ86XP0 818 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 SUMF1Q8NBK3 374 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 CRYGNQ8WXF5 182 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 MYADMQ96S97 322 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 MAP7D2Q96T17 732 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 HINFPQ9BQA5 517 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 EPS15L1Q9UBC2 864 aa11.23□□□□□ -0.61
TPM1-225ENST00000560679 CCDC69A6NI79 296 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 ADAMTS3O15072 1205 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 MAGEB2O15479 319 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 SGSM2O43147 1006 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 CLUHO75153 1309 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 FOSP01100 380 aaPredicted RBP11.22□□□□□ -0.61
TPM1-225ENST00000560679 SRFP11831 508 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 CHMLP26374 656 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 ADCY7P51828 1080 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 TBC1D8BQ0IIM8 1120 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 FUT2Q10981 343 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 PHLDB3Q6NSJ2 640 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 ZNF746Q6NUN9 644 aaPredicted RBP11.22□□□□□ -0.61
TPM1-225ENST00000560679 PPP1R18Q6NYC8 613 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 ZC3H14Q6PJT7 736 aaKnown RBP11.22□□□□□ -0.61
TPM1-225ENST00000560679 CASC1Q6TDU7 716 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 MICU3Q86XE3 530 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 SLC44A3Q8N4M1 653 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 TMEM87AQ8NBN3 555 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 CMASQ8NFW8 434 aaPredicted RBP11.22□□□□□ -0.61
TPM1-225ENST00000560679 GPR152Q8TDT2 470 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 MTA3Q9BTC8 594 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 TRAIPQ9BWF2 469 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 WDR6Q9NNW5 1121 aaKnown RBP11.22□□□□□ -0.61
TPM1-225ENST00000560679 MAN1C1Q9NR34 630 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 ARHGEF3Q9NR81 526 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 GABBR1Q9UBS5 961 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 INPP5FQ9Y2H2 1132 aa11.22□□□□□ -0.61
TPM1-225ENST00000560679 MIA3Q5JRA6 1907 aa11.21□□□□□ -0.61
TPM1-225ENST00000560679 SPDYE4A6NLX3 237 aa11.21□□□□□ -0.61
TPM1-225ENST00000560679 STK25O00506 426 aa11.21□□□□□ -0.61
TPM1-225ENST00000560679 LRRN2O75325 713 aa11.21□□□□□ -0.61
TPM1-225ENST00000560679 OFD1O75665 1012 aa11.21□□□□□ -0.61
TPM1-225ENST00000560679 OATP04181 439 aa11.21□□□□□ -0.61
TPM1-225ENST00000560679 SSBP05455 408 aaKnown RBP eCLIP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms