RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FAM50BQ9Y247 325 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 A0A0U1RQF3 1178 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 BTBD18B2RXH4 712 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 PI4K2BG5E9Z4 385 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 TBX3O15119 743 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 HOXA2O43364 376 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 MBTPS2O43462 519 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 BAG4O95429 457 aaKnown RBP11.45□□□□□ -0.58
LDLR-214ENST00000560628 SRGAP2CP0DJJ0 459 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 LAG3P18627 525 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 RBM10P98175 930 aaKnown RBP11.45□□□□□ -0.58
LDLR-214ENST00000560628 CDC42EP1Q00587 391 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 UBE3AQ05086 875 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 KCNT2Q6UVM3 1135 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 ZNF598Q86UK7 904 aaKnown RBP11.45□□□□□ -0.58
LDLR-214ENST00000560628 TPH2Q8IWU9 490 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 EFHBQ8N7U6 833 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 HELQQ8TDG4 1101 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 TNFRSF25Q93038 417 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 TMEM143Q96AN5 459 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 NAP1L4Q99733 375 aaKnown RBP11.45□□□□□ -0.58
LDLR-214ENST00000560628 LRFN3Q9BTN0 628 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 BRMS1Q9HCU9 246 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 TLR9Q9NR96 1032 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 DACT1Q9NYF0 836 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 CLEC1BQ9P126 229 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 CD207Q9UJ71 328 aa11.45□□□□□ -0.58
LDLR-214ENST00000560628 MUC3AQ02505 3323 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 A0A087WWV3 80 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 DKC1O60832 514 aaKnown RBP eCLIP11.44□□□□□ -0.581e-5■□□□□ 10.7
LDLR-214ENST00000560628 EOMESO95936 686 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 ATF7P17544 494 aaPredicted RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 ATP2B1P20020 1258 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 SFPQP23246 707 aaKnown RBP eCLIP11.44□□□□□ -0.58
LDLR-214ENST00000560628 YWHABP31946 246 aaKnown RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 POLGP54098 1239 aaPredicted RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 GUCY1B3Q02153 619 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 CYP4A11Q02928 519 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 ZP2Q05996 745 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 TRIM29Q14134 588 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 XKR9Q5GH70 373 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 TMEM31Q5JXX7 168 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 PLPP4Q5VZY2 271 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 TWF2Q6IBS0 349 aaKnown RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 CATSPER4Q7RTX7 472 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 ZNF410Q86VK4 478 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 C4orf19Q8IY42 314 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 DIS3L2Q8IYB7 885 aaKnown RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 SLFN12Q8IYM2 578 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 PRPF31Q8WWY3 499 aaKnown RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 SLC7A3Q8WY07 619 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 LPPQ93052 612 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 MSLNLQ96KJ4 702 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 ZNF558Q96NG5 402 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 JPH2Q9BR39 696 aaPredicted RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 LXNQ9BS40 222 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 INO80BQ9C086 356 aaPredicted RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 CHST12Q9NRB3 414 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 SPG21Q9NZD8 308 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 PUF60Q9UHX1 559 aaKnown RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 BARX2Q9UMQ3 279 aaPredicted RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 PIN4Q9Y237 131 aaKnown RBP11.44□□□□□ -0.58
LDLR-214ENST00000560628 WDR81Q562E7 1941 aa11.44□□□□□ -0.58
LDLR-214ENST00000560628 FNDC1Q4ZHG4 1894 aaPredicted RBP11.43□□□□□ -0.58
LDLR-214ENST00000560628 NT5C1B-RDH14C9J2C7 533 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 WNT7AO00755 349 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 SLITRK3O94933 977 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 GLP2RO95838 553 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 TXKP42681 527 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 PHKA2P46019 1235 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 PLCB3Q01970 1234 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 KRT17Q04695 432 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 SPIRE1Q08AE8 756 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 LAMTOR4Q0VGL1 99 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 ST3GAL1Q11201 340 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 SMAD4Q13485 552 aaKnown RBP11.43□□□□□ -0.58
LDLR-214ENST00000560628 SMAD2Q15796 467 aaKnown RBP11.43□□□□□ -0.58
LDLR-214ENST00000560628 CALCRLQ16602 461 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 CSPP1Q1MSJ5 1256 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 OTUD6AQ7L8S5 288 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 ADHFE1Q8IWW8 467 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 LRRC43Q8N309 656 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 MRPS27Q92552 414 aaKnown RBP11.43□□□□□ -0.58
LDLR-214ENST00000560628 TCF25Q9BQ70 676 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 EIF2AK1Q9BQI3 630 aaKnown RBP11.43□□□□□ -0.58
LDLR-214ENST00000560628 DHX33Q9H6R0 707 aaKnown RBP11.43□□□□□ -0.58
LDLR-214ENST00000560628 ZSWIM4Q9H7M6 989 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 IFT122Q9HBG6 1241 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 C11orf16Q9NQ32 467 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 ENTPD7Q9NQZ7 604 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 PRKAG3Q9UGI9 489 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 PCDHA12Q9UN75 941 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 COL4A3BPQ9Y5P4 624 aa11.43□□□□□ -0.58
LDLR-214ENST00000560628 KIAA1671Q9BY89 1806 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 C19orf67A6NJJ6 358 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 MEIS3P2A8K0S8 358 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 HIDE1A8MVS5 230 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 FSCN2O14926 492 aa11.42□□□□□ -0.58
LDLR-214ENST00000560628 EIF5BO60841 1220 aaKnown RBP11.42□□□□□ -0.58
LDLR-214ENST00000560628 GPR37L1O60883 481 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms