RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 NPHP3-ACAD11A0A0J9YXS1 232 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 ASAP2O43150 1006 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 HIP1RO75146 1068 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 CSDE1O75534 798 aaKnown RBP16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 RPS6KA5O75582 802 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 SRGAP2CP0DJJ0 459 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 ACTN1P12814 892 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 EIF4BP23588 611 aaKnown RBP16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 GUCY2CP25092 1073 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 RAD51AP2Q09MP3 1159 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 TPRNQ4KMQ1 711 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 ARSHQ5FYA8 562 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 RASIP1Q5U651 963 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 APBB2Q92870 758 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 DHX58Q96C10 678 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 GCOM2Q9BZD3 368 aaPredicted RBP16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 CXXC1Q9P0U4 656 aaPredicted RBP16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 PADI3Q9ULW8 664 aa16.46■□□□□ 0.23
VIPAS39-210ENST00000557466 ZBBXA8MT70 800 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 BAIAP3O94812 1187 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 PFKFB1P16118 471 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 FGFR4P22455 802 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 CMA1P23946 247 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 CACNB1Q02641 598 aaPredicted RBP16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 TFDP1Q14186 410 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 KIFAP3Q92845 792 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 REEP2Q9BRK0 252 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 TIPINQ9BVW5 301 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 TMX1Q9H3N1 280 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 MINDY3Q9H8M7 445 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 KCND2Q9NZV8 630 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 ST3GAL5Q9UNP4 418 aa16.45■□□□□ 0.22
VIPAS39-210ENST00000557466 A0A1B0GVL5 298 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 ABHD14A-ACY1A0A1B0GW23 586 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 A0A1W2PPC1 479 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 A0A1W2PQ27 194 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 A0A1W2PQ64 194 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 A0A1W2PQD8 194 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 LRRIQ4A6NIV6 560 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 POLR2DO15514 142 aaKnown RBP16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 PHKA2P46019 1235 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 PTENP60484 403 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 WDR5P61964 334 aaKnown RBP16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 NFX1Q12986 1120 aaKnown RBP16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 IKBKEQ14164 716 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 SRGAP1Q7Z6B7 1085 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 IFNLR1Q8IU57 520 aaPredicted RBP16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 FSIP1Q8NA03 581 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 LINC01599Q8WXQ3 324 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 DRC1Q96MC2 740 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 MTIF3Q9H2K0 278 aaKnown RBP16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 GOLPH3LQ9H4A5 285 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 KCNH3Q9ULD8 1083 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 HPSEQ9Y251 543 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 ADGRA3Q8IWK6 1321 aa16.44■□□□□ 0.22
VIPAS39-210ENST00000557466 FAM237AA0A1B0GTK4 181 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 MYMKA6NI61 221 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 SFI1A8K8P3 1242 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 GPR182O15218 404 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 SFPQP23246 707 aaKnown RBP eCLIP16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 NAMPTP43490 491 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 DEFB103AP81534 67 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 POU5F1BQ06416 359 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 PPP2R5AQ15172 486 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 ODR4Q5SWX8 454 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 CDCA2Q69YH5 1023 aaPredicted RBP16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 SV2BQ7L1I2 683 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 IQUBQ8NA54 791 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 MRPS27Q92552 414 aaKnown RBP16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 KIFC3Q9BVG8 833 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 INO80BQ9C086 356 aaPredicted RBP16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 CUEDC2Q9H467 287 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 ODF2LQ9ULJ1 636 aa16.43■□□□□ 0.22
VIPAS39-210ENST00000557466 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 MGEA5O60502 916 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 EFCAB14O75071 495 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 KRT18P05783 430 aaKnown RBP16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 KCNJ6P48051 423 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 NDUFA8P51970 172 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 PEX3P56589 373 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 MBTD1Q05BQ5 628 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 GIT2Q14161 759 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 STAMQ92783 540 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 IFT74Q96LB3 600 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 FTHL17Q9BXU8 183 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 NFKBIZQ9BYH8 718 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 TNMDQ9H2S6 317 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 SLC4A7Q9Y6M7 1214 aa16.42■□□□□ 0.22
VIPAS39-210ENST00000557466 TTC3P53804 2025 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 INO80B-WBP1J3KQ70 363 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 ACTN4O43707 911 aaKnown RBP16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 FAM13AO94988 1023 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 PLS3P13797 630 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 NPTX2P47972 431 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 DMP1Q13316 513 aaPredicted RBP16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 DSC3Q14574 896 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 FAM109BQ6ICB4 259 aaPredicted RBP16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 DYMQ7RTS9 669 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 CATSPER4Q7RTX7 472 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms