RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 IQCB1Q15051 598 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 ZRSR1Q15695 479 aaKnown RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 ME3Q16798 604 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 KRT24Q2M2I5 525 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 PLEKHN1Q494U1 663 aaPredicted RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC93Q567U6 631 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC158Q5M9N0 1113 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 JAKMIP3Q5VZ66 844 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 TSHZ3Q63HK5 1081 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 SULT6B1Q6IMI4 303 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 KRBA2Q6ZNG9 492 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC73Q6ZRK6 1079 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 ERC1Q8IUD2 1116 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 CEP57L1Q8IYX8 460 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 NETO2Q8NC67 525 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 GOLGA5Q8TBA6 731 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 SSH3Q8TE77 659 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 LEO1Q8WVC0 666 aaPredicted RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 KLHL6Q8WZ60 621 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 EVI5LQ96CN4 794 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 ZNF396Q96N95 335 aaPredicted RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 MMP19Q99542 508 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 BPIFA3Q9BQP9 254 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 OSBPL5Q9H0X9 879 aaPredicted RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 EPN3Q9H201 632 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 YY1AP1Q9H869 796 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 L2HGDHQ9H9P8 463 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 TRMT1Q9NXH9 659 aaKnown RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 PRKAG3Q9UGI9 489 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 FEZ2Q9UHY8 353 aaPredicted RBP3.3□□□□□ -1.88
SLIRP-208ENST00000556956 EMC9Q9Y3B6 208 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 PPLO60437 1756 aa3.3□□□□□ -1.88
SLIRP-208ENST00000556956 ARHGEF40Q8TER5 1519 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 NEO1Q92859 1461 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 EDC4Q6P2E9 1401 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ADGRL3Q9HAR2 1447 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CFAP65Q6ZU64 1925 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 MAP3K5Q99683 1374 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 PHLPP2Q6ZVD8 1323 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 PNMA6EA0A0J9YXQ4 647 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 GOLGA6L9A6NEM1 432 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 EFCAB8A8MWE9 144 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 POLR3GO15318 223 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ZSCAN12O43309 604 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 MYO1BO43795 1136 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 KINO60870 393 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ZRANB2O95218 330 aaKnown RBP eCLIP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 LARGE1O95461 756 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 MAP4K4O95819 1239 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 IFIT2P09913 472 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 PNMA6AP0CW24 399 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CAPN2P17655 700 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 SFPQP23246 707 aaKnown RBP eCLIP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 RPS6KB1P23443 525 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 GTF2A1P52655 376 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 PRR5P85299 388 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CCZ1BP86790 482 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CCZ1P86791 482 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ZNF200P98182 395 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 RESTQ13127 1097 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 OS9Q13438 667 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 TUBB2AQ13885 445 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 IDI1Q13907 227 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 KIR3DS1Q14943 382 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 NECTIN1Q15223 517 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ERCC6LQ2NKX8 1250 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC144BQ3MJ40 725 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 SV2CQ496J9 727 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 VWA3BQ502W6 1294 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ARHGAP29Q52LW3 1261 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 E4F1Q66K89 784 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CREB3L3Q68CJ9 461 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 BLOC1S2Q6QNY1 142 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CWC27Q6UX04 472 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 SYT10Q6XYQ8 523 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 LIPIQ6XZB0 460 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 LEKR1Q6ZMV7 388 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 MCM10Q7L590 875 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 G2E3Q7L622 706 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 EEPD1Q7L9B9 569 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 HOMER1Q86YM7 354 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 UNC5CLQ8IV45 518 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CCAR1Q8IX12 1150 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CLASRPQ8N2M8 674 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 NECAB1Q8N987 351 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 IQUBQ8NA54 791 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 CHST13Q8NET6 341 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 FBXO18Q8NFZ0 1043 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 COPS5Q92905 334 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 EXOC4Q96A65 974 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 PPP1R13BQ96KQ4 1090 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 LLPHQ9BRT6 129 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 TUBB2BQ9BVA1 445 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 AP5M1Q9H0R1 490 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 IL1RAPL2Q9NP60 686 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 NGRNQ9NPE2 291 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ECHDC1Q9NTX5 307 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ZNF446Q9NWS9 450 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 HMG20BQ9P0W2 317 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms