RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 SRGAP2CP0DJJ0 459 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 CKBP12277 381 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 SCP2P22307 547 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 THPOP40225 353 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 NAMPTP43490 491 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 NPTX2P47972 431 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 GPC3P51654 580 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 CRYBB1P53674 252 aaPredicted RBP11.27□□□□□ -0.61
SYNE2-215ENST00000554997 PEX3P56589 373 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 NLRP11P59045 1033 aaKnown RBP11.27□□□□□ -0.61
SYNE2-215ENST00000554997 EHHADHQ08426 723 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 BFSP2Q13515 415 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 KCNB1Q14721 858 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 KMT5BQ4FZB7 885 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 ODR4Q5SWX8 454 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 ZNF720Q7Z2F6 126 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 ZNF410Q86VK4 478 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 KSR1Q8IVT5 923 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 SLC17A8Q8NDX2 589 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 SMARCE1Q969G3 411 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 CCDC47Q96A33 483 aaKnown RBP11.27□□□□□ -0.61
SYNE2-215ENST00000554997 HTATIP2Q9BUP3 242 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 NFKBIZQ9BYH8 718 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 CELF4Q9BZC1 486 aaKnown RBP11.27□□□□□ -0.61
SYNE2-215ENST00000554997 ZHX3Q9H4I2 956 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 CDHR5Q9HBB8 845 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 OLFML3Q9NRN5 406 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 TMEM39AQ9NV64 488 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 RMND1Q9NWS8 449 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 FRMPD3Q5JV73 1810 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 PDE4DIPQ5VU43 2346 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 A0A087WZ62 844 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 CCDC169A6NNP5 214 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 H0YCG3 227 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 M0QZ92 97 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 PITPNM1O00562 1244 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 RHOBTB3O94955 611 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 LETM1O95202 739 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 CHRNA1P02708 482 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 PTENP60484 403 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 MRPS6P82932 125 aaKnown RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 MGAT3Q09327 533 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 TMEM62Q0P6H9 643 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 DMP1Q13316 513 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 CAPSQ13938 189 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 KIZQ2M2Z5 673 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 CCDC183Q5T5S1 534 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 ZNF618Q5T7W0 954 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 IFNLR1Q8IU57 520 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 RNF149Q8NC42 400 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 NLRP7Q8WX94 980 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 BSNDQ8WZ55 320 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 ERCC4Q92889 916 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 KCNN1Q92952 543 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 SYAP1Q96A49 352 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 FIZ1Q96SL8 496 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 FDXACB1Q9BRP7 624 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 GCOM2Q9BZD3 368 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 GTPBP4Q9BZE4 634 aaKnown RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 INO80BQ9C086 356 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-215ENST00000554997 ST6GALNAC4Q9H4F1 302 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 IFT122Q9HBG6 1241 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 KMT5AQ9NQR1 393 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 TBX21Q9UL17 535 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 SQORQ9Y6N5 450 aa11.26□□□□□ -0.61
SYNE2-215ENST00000554997 MYH9P35579 1960 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 MKI67P46013 3256 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 K7ERI5 159 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 KIAA0355O15063 1070 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 PARNO95453 639 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 IQCF3P0C7M6 154 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 SELPP16109 830 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 EIF4BP23588 611 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 ABCD1P33897 745 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 PHKA2P46019 1235 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 EFNA5P52803 228 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 NCKAP1LP55160 1127 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 COASYQ13057 564 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 PCBP1Q15365 356 aaKnown RBP eCLIP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 CDCA2Q69YH5 1023 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 CAVIN1Q6NZI2 390 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 TRAF7Q6Q0C0 670 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 RBM43Q6ZSC3 357 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 FAM43BQ6ZT52 329 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 HAUS6Q7Z4H7 955 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 SRGAP1Q7Z6B7 1085 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 SFR1Q86XK3 245 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 FAM178BQ8IXR5 827 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 USP38Q8NB14 1042 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 TMEM161BQ8NDZ6 487 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 DEPTORQ8TB45 409 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 NLRP4Q96MN2 994 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 NOC4LQ9BVI4 516 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 STRA6Q9BX79 667 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 C2orf40Q9H1Z8 148 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 HIPK3Q9H422 1215 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 TMEM134Q9H6X4 195 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 MRPL44Q9H9J2 332 aaKnown RBP11.25□□□□□ -0.61
SYNE2-215ENST00000554997 EXOC1Q9NV70 894 aa11.25□□□□□ -0.61
SYNE2-215ENST00000554997 TMEM63CQ9P1W3 806 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms