RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KCNK18Q7Z418 384 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 TMEM192Q8IY95 271 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 FIBCD1Q8N539 461 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 RNF149Q8NC42 400 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 SPRYD3Q8NCJ5 442 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 RNF169Q8NCN4 708 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 FBXO22Q8NEZ5 403 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 ERMNQ8TAM6 284 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 SNX29Q8TEQ0 813 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 SNX21Q969T3 373 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 PLIN2Q99541 437 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 JPH2Q9BR39 696 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 POLR3FQ9H1D9 316 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 ATP6V0A4Q9HBG4 840 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 KIAA1024Q9UPX6 916 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 MTMR6Q9Y217 621 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 BRWD1Q9NSI6 2320 aa12.9□□□□□ -0.34
CCDC88C-208ENST00000554165 COL4A4P53420 1690 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 E9PMD0 336 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 DGAT1O75907 488 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 XRCC6P12956 609 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 ATF7P17544 494 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 GLRA2P23416 452 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 ARL2P36404 184 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 PRPHP41219 470 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 RESTQ13127 1097 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 CAPSQ13938 189 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 PDIA5Q14554 519 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 ZRSR1Q15695 479 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 ODR4Q5SWX8 454 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 DTHD1Q6ZMT9 781 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 CATSPER4Q7RTX7 472 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 ZNF410Q86VK4 478 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 ECHDC2Q86YB7 292 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 SLC17A8Q8NDX2 589 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 BSNDQ8WZ55 320 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 INTS4Q96HW7 963 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 NACC1Q96RE7 527 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 C1orf112Q9NSG2 853 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 DDX19AQ9NUU7 478 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 DBR1Q9UK59 544 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 LRFN2Q9ULH4 789 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 PPME1Q9Y570 386 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 PCDHB7Q9Y5E2 793 aa12.89□□□□□ -0.35
CCDC88C-208ENST00000554165 VWA3AA6NCI4 1184 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 TBKBP1A7MCY6 615 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 MEIS3P2A8K0S8 358 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 CSPG5O95196 566 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 STAG3L1P0CL83 205 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 CTNNB1P35222 781 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 BMPR1AP36894 532 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 FOXD4L5Q5VV16 416 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 PADI6Q6TGC4 694 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 ZNF710Q8N1W2 664 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 LRRC15Q8TF66 581 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 TCP11Q8WWU5 503 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 FOXD4L4Q8WXT5 416 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 LPPQ93052 612 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 CCDC43Q96MW1 224 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 PNMA5Q96PV4 448 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 BHMT2Q9H2M3 363 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 PIN4Q9Y237 131 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 CLIC4Q9Y696 253 aa12.88□□□□□ -0.35
CCDC88C-208ENST00000554165 ARHGEF35A5YM69 484 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 LAD1O00515 517 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 GRM6O15303 877 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 GAS2O43903 313 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 ZSCAN20P17040 1043 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CYP11B2P19099 503 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 PDCP20941 246 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 SFPQP23246 707 aaKnown RBP eCLIP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 HOXA11P31270 313 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 PTENP60484 403 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CDC42EP1Q00587 391 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CEBPZQ03701 1054 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 C1QBPQ07021 282 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 GPM6BQ13491 265 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 SF3A1Q15459 793 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CLLU1OSQ5K130 101 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 HAUS3Q68CZ6 603 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 LRRC55Q6ZSA7 311 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 BRAPQ7Z569 592 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 ZNF598Q86UK7 904 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 EXOC8Q8IYI6 725 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CMTR2Q8IYT2 770 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CLP1Q92989 425 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CPB2Q96IY4 423 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CASD1Q96PB1 797 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 TMEM161AQ9NX61 479 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 USP20Q9Y2K6 914 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 FNDC1Q4ZHG4 1894 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 NLRC5Q86WI3 1866 aa12.87□□□□□ -0.35
CCDC88C-208ENST00000554165 CUL9Q8IWT3 2517 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 A0A0U1RQF3 1178 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 TTLL13PA6NNM8 815 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 H3BNC9 293 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 ASAP2O43150 1006 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 B4GALT5O43286 388 aa12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 GTPBP6O43824 516 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-208ENST00000554165 POU3F3P20264 500 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms