RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ST20-MTHFSA0A0A6YYL1 179 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 APAF1O14727 1248 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 APOL3O95236 402 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 LRG1P02750 347 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 PFKMP08237 780 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 IFIT2P09913 472 aaKnown RBP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 PDCP20941 246 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 VIPR1P32241 457 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 LGALS4P56470 323 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 PRAMEF9Q5VWM5 478 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 SLFN12LQ6IEE8 588 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 TSHZ1Q6ZSZ6 1077 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 USP45Q70EL2 814 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 SRGAP1Q7Z6B7 1085 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 CATIPQ7Z7H3 387 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 SLC41A1Q8IVJ1 513 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 PPM1NQ8N819 430 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 DIS3LQ8TF46 1054 aaKnown RBP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 TSPEARQ8WU66 669 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 C1GALT1C1Q96EU7 318 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 TSPAN17Q96FV3 270 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 FAM193BQ96PV7 902 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 ACO2Q99798 780 aaKnown RBP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 UCKL1Q9NWZ5 548 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 SIRT5Q9NXA8 310 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 DTLQ9NZJ0 730 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 SERPINB13Q9UIV8 391 aa6.42□□□□□ -1.38
SCFD1-209ENST00000553280 DBR1Q9UK59 544 aaKnown RBP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 CNOT6Q9ULM6 557 aaKnown RBP6.42□□□□□ -1.38
SCFD1-209ENST00000553280 MPIG6BO95866 241 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 HRGP04196 525 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 NEK3P51956 506 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 PRR5P85299 388 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 TRIM25Q14258 630 aaKnown RBP6.41□□□□□ -1.38
SCFD1-209ENST00000553280 MIB1Q86YT6 1006 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 SIAH1Q8IUQ4 282 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 FAM126BQ8IXS8 530 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 CALML6Q8TD86 181 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 TOE1Q96GM8 510 aaKnown RBP6.41□□□□□ -1.38
SCFD1-209ENST00000553280 ARHGAP28Q9P2N2 729 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 PRSS50Q9UI38 385 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 MBD1Q9UIS9 605 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-209ENST00000553280 DENND2AQ9ULE3 1009 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 MYPNQ86TC9 1320 aa6.41□□□□□ -1.38
SCFD1-209ENST00000553280 ZBED1O96006 694 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 MPOP05164 745 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 RHCEP18577 417 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 PTGS1P23219 599 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 HTR3AP46098 478 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 RGS3P49796 1198 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 SLC16A1P53985 500 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 EPHB3P54753 998 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 BCAR1P56945 870 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 ZNF280AP59817 542 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-209ENST00000553280 RHDQ02161 417 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 SSPNQ14714 243 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 UAP1L1Q3KQV9 507 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 CD276Q5ZPR3 534 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 TEPPQ6URK8 271 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 GRAMD1CQ8IYS0 662 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 ZBTB34Q8NCN2 500 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 OR14C36Q8NHC7 312 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 FATE1Q969F0 183 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 MVB12AQ96EY5 273 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 IL17RAQ96F46 866 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 STRBPQ96SI9 672 aaKnown RBP6.4□□□□□ -1.38
SCFD1-209ENST00000553280 FAM204AQ9H8W3 233 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 KCTD3Q9Y597 815 aa6.4□□□□□ -1.38
SCFD1-209ENST00000553280 A6NNZ2 444 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 NUDT19A8MXV4 375 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 H3BML4 177 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 IFRD1O00458 451 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-209ENST00000553280 MAFGO15525 162 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 ENO2P09104 434 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-209ENST00000553280 MC4RP32245 332 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 WASP42768 502 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 CDK17Q00537 523 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 SAFB2Q14151 953 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCFD1-209ENST00000553280 SPIDRQ14159 915 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 RAB3GAP1Q15042 981 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 ARPC5LQ9BPX5 153 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 AMNQ9BXJ7 453 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 CNTD2Q9H8S5 307 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 GALNT8Q9NY28 637 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 KLHL14Q9P2G3 628 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 FAM50BQ9Y247 325 aa6.39□□□□□ -1.39
SCFD1-209ENST00000553280 ZNF839A8K0R7 811 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 TPP1O14773 563 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 TUSC2O75896 110 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 PI3P19957 117 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 EDNRBP24530 442 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 THBS2P35442 1172 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 MAPKAPK2P49137 400 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 GPR15P49685 360 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 FXR1P51114 621 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCFD1-209ENST00000553280 PFKPQ01813 784 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 NOLC1Q14978 699 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCFD1-209ENST00000553280 PGS1Q32NB8 556 aa6.38□□□□□ -1.39
SCFD1-209ENST00000553280 RPTNQ6XPR3 784 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms