RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	MAMDC2	Q7Z304	686 aa	Predicted RBP	4.88	□□□□□ -1.63
USP44-208	ENST00000552440	UBE2Q1	Q7Z7E8	422 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	GTF2IRD2	Q86UP8	949 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	LCA5	Q86VQ0	697 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	SP8	Q8IXZ3	490 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	TCTN2	Q96GX1	697 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	C1orf159	Q96HA4	380 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.88	□□□□□ -1.63
USP44-208	ENST00000552440	ZMAT2	Q96NC0	199 aa	Known RBP	4.88	□□□□□ -1.63
USP44-208	ENST00000552440	KCNC2	Q96PR1	638 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	G6PC3	Q9BUM1	346 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	SLC26A6	Q9BXS9	759 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	HDAC8	Q9BY41	377 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	NKX2-4	Q9H2Z4	354 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	ARFGAP3	Q9NP61	516 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	GCM1	Q9NP62	436 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	CRYL1	Q9Y2S2	319 aa		4.88	□□□□□ -1.63
USP44-208	ENST00000552440	RASA4B	C9J798	803 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	RASA4	O43374	803 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	AP1G1	O43747	822 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	ARIH2	O95376	493 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	SCG5	P05408	212 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	GALNS	P34059	522 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	IL6ST	P40189	918 aa	Predicted RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	BUD31	P41223	144 aa	Predicted RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	SNX16	P57768	344 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	PSMC1	P62191	440 aa	Known RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	FAP	Q12884	760 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	RRP12	Q5JTH9	1297 aa	Known RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	SLC35F1	Q5T1Q4	408 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	C11orf74	Q86VG3	221 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	TMEM145	Q8NBT3	493 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	APPL2	Q8NEU8	664 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	ATP6V1E2	Q96A05	226 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	RSRC1	Q96IZ7	334 aa	Known RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	FCRL2	Q96LA5	508 aa	Predicted RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	CCDC140	Q96MF4	163 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	ORAI3	Q9BRQ5	295 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	XPO4	Q9C0E2	1151 aa	Known RBP	4.87	□□□□□ -1.63
USP44-208	ENST00000552440	FAM204A	Q9H8W3	233 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	VTA1	Q9NP79	307 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	NKIRAS2	Q9NYR9	191 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	RTEL1	Q9NZ71	1219 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	PRR13	Q9NZ81	148 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	SNX5	Q9Y5X3	404 aa		4.87	□□□□□ -1.63
USP44-208	ENST00000552440	ASXL2	Q76L83	1435 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SHISA3	A0PJX4	238 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	ANKRD18B	A2A2Z9	1011 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SYNDIG1L	A6NDD5	238 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	RRN3P2	A6NIE6	340 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	C19orf81	C9J6K1	198 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	AREL1	O15033	823 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	FOXD2	O60548	495 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	MAFK	O60675	156 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	PQBP1	O60828	265 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	TIPRL	O75663	272 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	CRTAM	O95727	393 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	CFB	P00751	764 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	HRG	P04196	525 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	HOXC12	P31275	282 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	ADCYAP1R1	P41586	468 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	MMP14	P50281	582 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	RTP1	P59025	263 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	ERVFRD-1	P60508	538 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	HTRA3	P83110	453 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	TNFAIP2	Q03169	654 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	GRM1	Q13255	1194 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SART3	Q15020	963 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	NBPF9	Q3BBW0	867 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	RGL3	Q3MIN7	710 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	DNAJC21	Q5F1R6	531 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	IQCE	Q6IPM2	695 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	HIBCH	Q6NVY1	386 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	UBE2R2	Q712K3	238 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	ARL6IP6	Q8N6S5	226 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	FAM156A	Q8NDB6	213 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	TBC1D31	Q96DN5	1066 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	AHCYL2	Q96HN2	611 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	UBXN10	Q96LJ8	280 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	FAM193B	Q96PV7	902 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	RNF38	Q9H0F5	515 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SMOC1	Q9H4F8	434 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	TOPORS	Q9NS56	1045 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	MRGBP	Q9NV56	204 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	MBD1	Q9UIS9	605 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	TRAF6	Q9Y4K3	522 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	PCDHB12	Q9Y5F1	795 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	MRFAP1	Q9Y605	127 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	FHOD1	Q9Y613	1164 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	TAF6L	Q9Y6J9	622 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440		A0A1W2PQ45	241 aa	Predicted RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440		A0A1W2PQY0	241 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440		B4E1Z4	1266 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SIGLEC6	O43699	453 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SYP	P08247	313 aa		4.86	□□□□□ -1.63
USP44-208	ENST00000552440	SNRPB2	P08579	225 aa	Known RBP	4.86	□□□□□ -1.63
USP44-208	ENST00000552440	KCNA6	P17658	529 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms