RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ACTR2P61160 394 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 PLPPR4Q7Z2D5 763 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 ERMP1Q7Z2K6 904 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 RALYLQ86SE5 291 aaKnown RBP11.98□□□□□ -0.49
VPS29-208ENST00000550267 SMC5Q8IY18 1101 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 ADSSL1Q8N142 457 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 CTCFLQ8NI51 663 aaPredicted RBP11.98□□□□□ -0.49
VPS29-208ENST00000550267 CASP10Q92851 521 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 NKD2Q969F2 451 aaPredicted RBP11.98□□□□□ -0.49
VPS29-208ENST00000550267 PPP1R16BQ96T49 567 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 PSTPIP2Q9H939 334 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 NGRNQ9NPE2 291 aaKnown RBP11.98□□□□□ -0.49
VPS29-208ENST00000550267 TMEM161AQ9NX61 479 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 SEC63Q9UGP8 760 aaKnown RBP11.98□□□□□ -0.49
VPS29-208ENST00000550267 PCDHA6Q9UN73 950 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 PCDHA8Q9Y5H6 950 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 HCFC2Q9Y5Z7 792 aa11.98□□□□□ -0.49
VPS29-208ENST00000550267 FNDC1Q4ZHG4 1894 aaPredicted RBP11.97□□□□□ -0.49
VPS29-208ENST00000550267 ZFHX2Q9C0A1 2572 aaPredicted RBP11.97□□□□□ -0.49
VPS29-208ENST00000550267 SPDYE3A6NKU9 549 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 E7EWF7 191 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 MAFGO15525 162 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 ANTXR2P58335 489 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 FAM189BP81408 668 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 SART3Q15020 963 aaKnown RBP11.97□□□□□ -0.49
VPS29-208ENST00000550267 TPRNQ4KMQ1 711 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 LCE2CQ5TA81 110 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 CES5AQ6NT32 575 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 KCNT2Q6UVM3 1135 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 LRRC55Q6ZSA7 311 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 TMC7Q7Z402 723 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 FAM228AQ86W67 206 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 KIAA0319LQ8IZA0 1049 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 ZNF654Q8IZM8 581 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 CMTR1Q8N1G2 835 aaKnown RBP11.97□□□□□ -0.49
VPS29-208ENST00000550267 SRBD1Q8N5C6 995 aaKnown RBP11.97□□□□□ -0.49
VPS29-208ENST00000550267 NCOA7Q8NI08 942 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 IGDCC4Q8TDY8 1250 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 ZNF558Q96NG5 402 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 MXRA8Q9BRK3 442 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 ADAM7Q9H2U9 754 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 KCNH7Q9NS40 1196 aa11.97□□□□□ -0.49
VPS29-208ENST00000550267 NFASCO94856 1347 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 hCG_1642624A0A1W2PR95 340 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 GPR182O15218 404 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 CLASP2O75122 1294 aaKnown RBP11.96□□□□□ -0.49
VPS29-208ENST00000550267 ARP10275 920 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 SMARCA1P28370 1054 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 NUCB1Q02818 461 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 PTH1RQ03431 593 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 ITIH3Q06033 890 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 ITGB3BPQ13352 177 aaPredicted RBP11.96□□□□□ -0.49
VPS29-208ENST00000550267 DSC3Q14574 896 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 KIZQ2M2Z5 673 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 ODR4Q5SWX8 454 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 MCTP2Q6DN12 878 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 KANK3Q6NY19 840 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 C12orf76Q8N812 135 aaPredicted RBP11.96□□□□□ -0.49
VPS29-208ENST00000550267 FLCNQ8NFG4 579 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 CYP2W1Q8TAV3 490 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 NECTIN4Q96NY8 510 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 CASD1Q96PB1 797 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 MAP3K14Q99558 947 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 OSMRQ99650 979 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 SDF4Q9BRK5 362 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 TMEM117Q9H0C3 514 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 MFSD1Q9H3U5 465 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 ELAC1Q9H777 363 aaKnown RBP11.96□□□□□ -0.49
VPS29-208ENST00000550267 RNF19AQ9NV58 838 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 LIMD1Q9UGP4 676 aa11.96□□□□□ -0.49
VPS29-208ENST00000550267 BAZ2BQ9UIF8 2168 aaKnown RBP11.96□□□□□ -0.5
VPS29-208ENST00000550267 ZDBF2Q9HCK1 2354 aa11.96□□□□□ -0.5
VPS29-208ENST00000550267 LOXHD1Q8IVV2 1947 aa11.96□□□□□ -0.5
VPS29-208ENST00000550267 C2orf71A6NGG8 1288 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 HBP1O60381 514 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 DDAH1O94760 285 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 ATG7O95352 703 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 RXRAP19793 462 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 KIF5BP33176 963 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 CA8P35219 290 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 PPM1AP35813 382 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 MTHFRP42898 656 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 CLCN5P51795 746 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 CRYBB1P53674 252 aaPredicted RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 KRT17Q04695 432 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 SMC1AQ14683 1233 aaKnown RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 RARS2Q5T160 578 aaKnown RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 CWF19L1Q69YN2 538 aaKnown RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 FAM43BQ6ZT52 329 aaPredicted RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 ZDHHC14Q8IZN3 488 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 LRRC43Q8N309 656 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 MRPL43Q8N983 215 aaKnown RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 TDRD5Q8NAT2 981 aaKnown RBP11.95□□□□□ -0.5
VPS29-208ENST00000550267 PGBD1Q96JS3 809 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 LZTS2Q9BRK4 669 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 LY9Q9HBG7 655 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 SPG21Q9NZD8 308 aa11.95□□□□□ -0.5
VPS29-208ENST00000550267 IGKV6D-21A0A0A0MT36 114 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 DDX39AO00148 427 aaKnown RBP11.94□□□□□ -0.5
VPS29-208ENST00000550267 BACH1O14867 736 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms