RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 BTBD18B2RXH4 712 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 LOC730098B7Z3J9 87 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 KINO60870 393 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 GADD45BO75293 160 aaPredicted RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 KRT37O76014 449 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 F2P00734 622 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 GOLGA8HP0CJ92 632 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 NRIP1P48552 1158 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 MRPL12P52815 198 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 SLC39A14Q15043 492 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PWP2Q15269 919 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 ZRSR1Q15695 479 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 ZSCAN23Q3MJ62 389 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 USH1GQ495M9 461 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PLEKHG4Q58EX7 1191 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 KRT25Q7Z3Z0 450 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 TRIM46Q7Z4K8 759 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 ADGRD2Q7Z7M1 963 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 RBM23Q86U06 439 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 HOMER1Q86YM7 354 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 DAGLBQ8NCG7 672 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 LINC00301Q8NCQ3 95 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 SMRP1Q8NCR6 262 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 NLRP7Q8WX94 980 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 CLEC4DQ8WXI8 215 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PIBF1Q8WXW3 757 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 MRPS27Q92552 414 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 NKD2Q969F2 451 aaPredicted RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 TOP1MTQ969P6 601 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 NAP1L4Q99733 375 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PYM1Q9BRP8 204 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 LMAN2LQ9H0V9 348 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 NUP62CLQ9H1M0 184 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 VAT1LQ9HCJ6 419 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 GPCPD1Q9NPB8 672 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PNMA2Q9UL42 364 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 MORC2Q9Y6X9 1032 aaPredicted RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 SPTBN2O15020 2390 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 GREB1LQ9C091 1923 aaPredicted RBP7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 DMXL1Q9Y485 3027 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 SIP14410 1827 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PTPRSQ13332 1948 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 hCG_1642624A0A1W2PR95 340 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 B4DLN1 442 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 PROB1E7EW31 1015 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 ZBTB5O15062 677 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 PLA2G6O60733 806 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 CUTAO60888 179 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 BMPR1AP36894 532 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 USP46P62068 366 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 ORC2Q13416 577 aaPredicted RBP7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 PTPN21Q16825 1174 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 TPRNQ4KMQ1 711 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 CCDC62Q6P9F0 684 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 LRSAM1Q6UWE0 723 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 SERINC5Q86VE9 423 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 KRI1Q8N9T8 703 aaKnown RBP7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 FSIP1Q8NA03 581 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 MSLNLQ96KJ4 702 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 OSBPL7Q9BZF2 842 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 TNMDQ9H2S6 317 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 GJB4Q9NTQ9 266 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 CLEC1BQ9P126 229 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 PCDHGC5Q9Y5F6 944 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 CLIC4Q9Y696 253 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 MRVI1Q9Y6F6 885 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 CHD6Q8TD26 2715 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 CEP250Q9BV73 2442 aa7.98□□□□□ -1.13
DEPDC4-208ENST00000549341 MYH15Q9Y2K3 1946 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 C17orf102A2RUQ5 167 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 SMCO2A6NFE2 343 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 C5orf67F2Z3F1 127 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 EYA4O95677 639 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 CCDC192P0DO97 292 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 EIF2AK2P19525 551 aaKnown RBP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 IBSPP21815 317 aaPredicted RBP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 CMA1P23946 247 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 ICAM3P32942 547 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 TXLNAP40222 546 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 NBL1P41271 181 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 ADCY7P51828 1080 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 RBM10P98175 930 aaKnown RBP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 FAM160A1Q05DH4 1040 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 ADAM15Q13444 863 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 BTG3Q14201 252 aaPredicted RBP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 CBX2Q14781 532 aaPredicted RBP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 NONOQ15233 471 aaKnown RBP eCLIP7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 TTC38Q5R3I4 469 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 WWC2Q6AWC2 1192 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 SASS6Q6UVJ0 657 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 DGLUCYQ7Z3D6 616 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 ADGRF4Q8IZF3 695 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 EFHBQ8N7U6 833 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 TMEM105Q8N8V8 129 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 EHBP1Q8NDI1 1231 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 DNERQ8NFT8 737 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 PPTC7Q8NI37 304 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 CUL5Q93034 780 aa7.97□□□□□ -1.13
DEPDC4-208ENST00000549341 ATP6V0A1Q93050 837 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms