RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 USP17L6PQ6QN14 398 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 GCOM2Q9BZD3 368 aaPredicted RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 TBK1Q9UHD2 729 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 PIK3C2BO00750 1634 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 CEMIPQ8WUJ3 1361 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 A0A1W2PQJ5 194 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 ZSCAN20P17040 1043 aaPredicted RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 GUCY2CP25092 1073 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 COPB2P35606 906 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SEPT12Q8IYM1 358 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 ZNF34Q8IZ26 560 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 BANK1Q8NDB2 785 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SNX24Q9Y343 169 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 DIP2AQ14689 1571 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 KRT38O76015 456 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 KRT10P13645 584 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 PHKA2P46019 1235 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 RSRC2Q7L4I2 434 aaKnown RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 GDAP1Q8TB36 358 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 ATP6V1G3Q96LB4 118 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 NUP85Q9BW27 656 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 CLDN3O15551 220 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 TADA2BQ86TJ2 420 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 KCNB2Q92953 911 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 TRIM55Q9BYV6 548 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 TRIM9Q9C026 710 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 SFI1A8K8P3 1242 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 SETSIPP0DME0 302 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 MKRN3Q13064 507 aaKnown RBP13.39□□□□□ -0.27
COL4A6-209ENST00000545689 MAPK6Q16659 721 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 NFRKBQ6P4R8 1299 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 CRLF3Q8IUI8 442 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 FAF2Q96CS3 445 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 NUDCD1Q96RS6 583 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 PITPNM3Q9BZ71 974 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 ACSL3O95573 720 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 KRT7P08729 469 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 ESRRAP11474 423 aaPredicted RBP13.39□□□□□ -0.27
COL4A6-209ENST00000545689 SLC1A1P43005 524 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 GPSM2P81274 684 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 COG1Q8WTW3 980 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 GPR101Q96P66 508 aaPredicted RBP13.39□□□□□ -0.27
COL4A6-209ENST00000545689 EIF2AK1Q9BQI3 630 aaKnown RBP13.39□□□□□ -0.27
COL4A6-209ENST00000545689 KCNF1Q9H3M0 494 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 GINM1Q9NU53 330 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 CPS1P31327 1500 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 TOM1L1O75674 476 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 GCLMP48507 274 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 NR1I3Q14994 352 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 NUGGCQ68CJ6 796 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 SNF8Q96H20 258 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 PACSIN2Q9UNF0 486 aaPredicted RBP13.39□□□□□ -0.27
COL4A6-209ENST00000545689 GMNCA6NCL1 334 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 MMP10P09238 476 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 KLC3Q6P597 504 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 MIGA2Q7L4E1 593 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 SYNE4Q8N205 404 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 NOC2LQ9Y3T9 749 aaKnown RBP13.39□□□□□ -0.27
COL4A6-209ENST00000545689 LRRIQ1Q96JM4 1722 aa13.39□□□□□ -0.27
COL4A6-209ENST00000545689 ITSN1Q15811 1721 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 GPC3P51654 580 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 SNAP25P60880 206 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ZNF699Q32M78 642 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 TBC1D10BQ4KMP7 808 aaPredicted RBP13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ANKRD40Q6AI12 368 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 LRIG3Q6UXM1 1119 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 SNX12Q9UMY4 172 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 POTEFA5A3E0 1075 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 POTEIP0CG38 1075 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 PAMP19021 973 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 POTEGQ6S5H5 508 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 POTEEQ6S8J3 1075 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 SLC44A5Q8NCS7 719 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 TRIM4Q9C037 500 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 SCOCQ9UIL1 159 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 COPEO14579 308 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 TDP2O95551 362 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ABL1P00519 1130 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 RXRBP28702 533 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ARHGEF6Q15052 776 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 RHOT1Q8IXI2 618 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 GPD1LQ8N335 351 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 GRAMD1AQ96CP6 724 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ZWILCHQ9H900 591 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ZNF302Q9NR11 478 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 F5H6K3 240 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 FOXN1O15353 648 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 KLRC3Q07444 240 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 PDCLQ13371 301 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 HIBCHQ6NVY1 386 aaPredicted RBP13.38□□□□□ -0.27
COL4A6-209ENST00000545689 CD163L1Q9NR16 1453 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 DENND3A2RUS2 1198 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 ATP1A1P05023 1023 aaKnown RBP13.38□□□□□ -0.27
COL4A6-209ENST00000545689 GUCY1A2P33402 732 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 TAF1BQ53T94 588 aaPredicted RBP13.38□□□□□ -0.27
COL4A6-209ENST00000545689 RASIP1Q5U651 963 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 SCARA5Q6ZMJ2 495 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 LXNQ9BS40 222 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 TRIM15Q9C019 465 aa13.38□□□□□ -0.27
COL4A6-209ENST00000545689 SMYD2Q9NRG4 433 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms