RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.81□□□□□ -1.64
SNHG1-220ENST00000544550 SUV39H2Q9H5I1 410 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 C12orf49Q9H741 205 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 ARMT1Q9H993 441 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 AVENQ9NQS1 362 aaPredicted RBP4.81□□□□□ -1.64
SNHG1-220ENST00000544550 MTMR4Q9NYA4 1195 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 CLEC1BQ9P126 229 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 HDAC6Q9UBN7 1215 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 VTI1BQ9UEU0 232 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 CCPG1Q9ULG6 757 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 PCDHGC5Q9Y5F6 944 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 SLC4A4Q9Y6R1 1079 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 ZNF318Q5VUA4 2279 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 KMT2EQ8IZD2 1858 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 NAV1Q8NEY1 1877 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 CDK5RAP2Q96SN8 1893 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 PARP14Q460N5 1801 aa4.81□□□□□ -1.64
SNHG1-220ENST00000544550 REV3LO60673 3130 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ZBED9Q6R2W3 1325 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ZFHX4Q86UP3 3567 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 CYP2D7A0A087X1C5 515 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 IGKV6D-41A0A0C4DH26 115 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ZBTB42B2RXF5 422 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 SIN3BO75182 1162 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 F2P00734 622 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 PDGFBP01127 241 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 CTSHP09668 335 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 BMP4P12644 408 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 TCF3P15923 654 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 MX2P20592 715 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 EIF4BP23588 611 aaKnown RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 EDNRBP24530 442 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 GTF2F1P35269 517 aaKnown RBP eCLIP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 GPLD1P80108 840 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 BAATQ14032 418 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 BTG3Q14201 252 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 GRM2Q14416 872 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 MBTPS1Q14703 1052 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ACAP1Q15027 740 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ANGPT1Q15389 498 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 TRIM71Q2Q1W2 868 aaKnown RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 CCDC184Q52MB2 194 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 SBK1Q52WX2 424 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 MUM1L1Q5H9M0 696 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ZSCAN25Q6NSZ9 544 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 GIMAP6Q6P9H5 292 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 SYT9Q86SS6 491 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 KIAA2013Q8IYS2 634 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 CEP120Q8N960 986 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 GLIS3Q8NEA6 775 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 SSH3Q8TE77 659 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 PPP1R13LQ8WUF5 828 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 AFG1LQ8WV93 481 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 RUBCNQ92622 972 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 KAT2BQ92831 832 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 EAF2Q96CJ1 260 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 CEP95Q96GE4 821 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 BORCS6Q96GS4 357 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 NECTIN4Q96NY8 510 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 RTP3Q9BQQ7 232 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 ALG1Q9BT22 464 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 BCO2Q9BYV7 579 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 MAF1Q9H063 256 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 LATS2Q9NRM7 1088 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 PRR12Q9ULL5 1215 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 BARX2Q9UMQ3 279 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 PLAGL2Q9UPG8 496 aa4.8□□□□□ -1.64
SNHG1-220ENST00000544550 NOP58Q9Y2X3 529 aaKnown RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 DDX49Q9Y6V7 483 aaKnown RBP4.8□□□□□ -1.64
SNHG1-220ENST00000544550 PLXNA3P51805 1871 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 HAS3O00219 553 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 GOLIM4O00461 696 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 SCAMP3O14828 347 aaKnown RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 IPO8O15397 1037 aaKnown RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 PRKAB2O43741 272 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 GADD45BO75293 160 aaPredicted RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 CSPG5O95196 566 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 GLP2RO95838 553 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 LINC00271P0C7V0 271 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 TSPY3P0CV98 308 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 TSPY8P0CW00 308 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 ARAFP10398 606 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 GNAT1P11488 350 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 HOXB8P17481 243 aaPredicted RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 AOC1P19801 751 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 CALML3P27482 149 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 ADD2P35612 726 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 NRIP1P48552 1158 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 ATP8B2P98198 1209 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 UBE3AQ05086 875 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 COL9A2Q14055 689 aaPredicted RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 UBE3CQ15386 1083 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 RSPO4Q2I0M5 234 aaPredicted RBP4.79□□□□□ -1.64
SNHG1-220ENST00000544550 KIAA0753Q2KHM9 967 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 HSP90AB4PQ58FF6 505 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 NXPE4Q6UWF7 544 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 RNF207Q6ZRF8 634 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 AACSQ86V21 672 aa4.79□□□□□ -1.64
SNHG1-220ENST00000544550 SERINC5Q86VE9 423 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms