RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CYP2C18	P33260	490 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	NAMPT	P43490	491 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	PHKA2	P46019	1235 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	GPC3	P51654	580 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	DPYD	Q12882	1025 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	MAPK7	Q13164	816 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	TRIM71	Q2Q1W2	868 aa	Known RBP	11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	UNC13D	Q70J99	1090 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	LRRC8D	Q7L1W4	858 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	RPAIN	Q86UA6	219 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	ZNF410	Q86VK4	478 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	ZBTB8OS	Q8IWT0	167 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	DAW1	Q8N136	415 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	BSND	Q8WZ55	320 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	ERCC4	Q92889	916 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	SMARCE1	Q969G3	411 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	OSMR	Q99650	979 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	FDXACB1	Q9BRP7	624 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	ADAMTS10	Q9H324	1103 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	CLSTN2	Q9H4D0	955 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	DOCK5	Q9H7D0	1870 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	MRPL44	Q9H9J2	332 aa	Known RBP	11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	C17orf75	Q9HAS0	396 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	KMT5A	Q9NQR1	393 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	TBX21	Q9UL17	535 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	NR2E3	Q9Y5X4	410 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	PVALEF	A0A1B0GWK0	134 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	TRIM43B	A6NCK2	446 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	INO80B-WBP1	J3KQ70	363 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545		K7ENM7	598 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	PITPNM1	O00562	1244 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	KIAA0355	O15063	1070 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	SLC16A4	O15374	487 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	GPR32	O75388	356 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	CSDE1	O75534	798 aa	Known RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	CHRNA1	P02708	482 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	NPTX2	P47972	431 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	CRYBB1	P53674	252 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	MDM2	Q00987	491 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	COASY	Q13057	564 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	CAPS	Q13938	189 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	TMEM132A	Q24JP5	1023 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	KMT5B	Q4FZB7	885 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	SFR1	Q86XK3	245 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	FAM178B	Q8IXR5	827 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	ELOA2	Q8IYF1	753 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	SPIRE2	Q8WWL2	714 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	SYAP1	Q96A49	352 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	KIFC3	Q9BVG8	833 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	INO80B	Q9C086	356 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	C2orf40	Q9H1Z8	148 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	CDHR5	Q9HBB8	845 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	RMND1	Q9NWS8	449 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	SEL1L	Q9UBV2	794 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	PCDHA5	Q9Y5H7	936 aa		11.21	□□□□□ -0.61
CPSF7-221	ENST00000543545	UMODL1	Q5DID0	1318 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	SCN10A	Q9Y5Y9	1956 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545		H0YCG3	227 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545		K7ERI5	159 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	RPS6KA5	O75582	802 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	TIMP1	P01033	207 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	IQCF3	P0C7M6	154 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	GHR	P10912	638 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	SYN1	P17600	705 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	EIF4B	P23588	611 aa	Known RBP	11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	ZNF131	P52739	623 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	PTEN	P60484	403 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	NCBP1	Q09161	790 aa	Known RBP	11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	NFX1	Q12986	1120 aa	Known RBP	11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	FAM26D	Q5JW98	314 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	CCDC183	Q5T5S1	534 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	CAVIN1	Q6NZI2	390 aa	Known RBP	11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	CNNM4	Q6P4Q7	775 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	STXBP4	Q6ZWJ1	553 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	SRGAP1	Q7Z6B7	1085 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	TMEM199	Q8N511	208 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	SLC17A8	Q8NDX2	589 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	HPS3	Q969F9	1004 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	SCLY	Q96I15	445 aa		11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	LBHD1	Q9BQE6	289 aa	Predicted RBP	11.2	□□□□□ -0.62
CPSF7-221	ENST00000543545	DENND3	A2RUS2	1198 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	BIN1	O00499	593 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	GPR182	O15218	404 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	KLRC4	O43908	158 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	ERLIN2	O94905	339 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	GCNT3	O95395	438 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	DARS	P14868	501 aa	Known RBP	11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	FGFR4	P22455	802 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	SFPQ	P23246	707 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	NMT1	P30419	496 aa	Known RBP	11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	EFNA5	P52803	228 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	POU5F1B	Q06416	359 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	RBL2	Q08999	1139 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	MGAT3	Q09327	533 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	STRN3	Q13033	797 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	PAK2	Q13177	524 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	MAPK6	Q16659	721 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms