RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 GTF3C6Q969F1 213 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PNMA5Q96PV4 448 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 COL25A1Q9BXS0 654 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 SH2B1Q9NRF2 756 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 GJD2Q9UKL4 321 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 GABRQQ9UN88 632 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 LZTS1Q9Y250 596 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PFASO15067 1338 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CNTNAP5Q8WYK1 1306 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 A0A0G2JMZ2 1700 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PARP14Q460N5 1801 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 hCG_1984214I3L0E3 225 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 NFIBO00712 420 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 LARGE1O95461 756 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PGK2P07205 417 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CALML3P27482 149 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CCINQ13939 588 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 NTRK3Q16288 839 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 INO80DQ53TQ3 878 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 FBXO46Q6PJ61 603 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 RNF207Q6ZRF8 634 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 KRTAP1-3Q8IUG1 177 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 ZNF713Q8N859 430 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 FBF1Q8TES7 1133 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CLEC4DQ8WXI8 215 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PPM1EQ8WY54 764 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 CUL5Q93034 780 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 ANAPC16Q96DE5 110 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 SLC30A3Q99726 388 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 SPON2Q9BUD6 331 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 RNF26Q9BY78 433 aaPredicted RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 A1CFQ9NQ94 594 aaKnown RBP5.81□□□□□ -1.48
CLIP1-217ENST00000543205 ADAMTS1Q9UHI8 967 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 PTCH2Q9Y6C5 1203 aa5.81□□□□□ -1.48
CLIP1-217ENST00000543205 GCOM1H8Y6P7 765 aaPredicted RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 EIF1AYO14602 144 aaKnown RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 ADCY3O60266 1144 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 ADAM23O75077 832 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 COBLO75128 1261 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 DEXIO95424 95 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 CFBP00751 764 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 POLR2MP0CAP2 368 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 SCG2P13521 617 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 NAPAP54920 295 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 BAATQ14032 418 aaPredicted RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 SIM2Q14190 667 aaPredicted RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 PFKFB3Q16875 520 aaPredicted RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 WWC2Q6AWC2 1192 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 ZNF438Q7Z4V0 828 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 CCDC83Q8IWF9 413 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 MYO1HQ8N1T3 1032 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 UBR7Q8N806 425 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 TTC8Q8TAM2 541 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 CCDC12Q8WUD4 166 aaPredicted RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 WASF1Q92558 559 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 USP6NLQ92738 828 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 BHMTQ93088 406 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 GSX2Q9BZM3 304 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 CYP39A1Q9NYL5 469 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 ZIM2Q9NZV7 527 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 TAGLN3Q9UI15 199 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 DIS3Q9Y2L1 958 aaKnown RBP5.8□□□□□ -1.48
CLIP1-217ENST00000543205 CASP8AP2Q9UKL3 1982 aa5.8□□□□□ -1.48
CLIP1-217ENST00000543205 COL11A1P12107 1806 aaPredicted RBP5.79□□□□□ -1.48
CLIP1-217ENST00000543205 TBX3O15119 743 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 SASH3O75995 380 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 HOXC6P09630 235 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 XBP1P17861 261 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 NFKB1P19838 968 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 GRK4P32298 578 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 RPS6P62753 249 aaKnown RBP5.79□□□□□ -1.48
CLIP1-217ENST00000543205 CNTN2Q02246 1040 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 RAPGEF1Q13905 1077 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 PKN1Q16512 942 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 ZNF792Q3KQV3 632 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 SLC9C1Q4G0N8 1177 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 MFSD14CQ5VZR4 134 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 THNSL2Q86YJ6 484 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 SVIPQ8NHG7 77 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 SMARCC2Q8TAQ2 1214 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 NPLOC4Q8TAT6 608 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 TMX3Q96JJ7 454 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 LLPHQ9BRT6 129 aaKnown RBP5.79□□□□□ -1.48
CLIP1-217ENST00000543205 PSTPIP2Q9H939 334 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 C11orf16Q9NQ32 467 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 ST7Q9NRC1 585 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 BARHL2Q9NY43 387 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 ORC3Q9UBD5 711 aaPredicted RBP5.79□□□□□ -1.48
CLIP1-217ENST00000543205 TPX2Q9ULW0 747 aaKnown RBP5.79□□□□□ -1.48
CLIP1-217ENST00000543205 MRPS23Q9Y3D9 190 aaKnown RBP5.79□□□□□ -1.48
CLIP1-217ENST00000543205 CUL9Q8IWT3 2517 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 DNAJC25-GNG10A0A024R161 153 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 SMCO2A6NFE2 343 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 B4DLN1 442 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 STXBP3O00186 592 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 CTDNEP1O95476 244 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 HMGCRP04035 888 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 RARAP10276 462 aa5.79□□□□□ -1.48
CLIP1-217ENST00000543205 ELNP15502 786 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms