RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 MXD4Q14582 209 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 STK38Q15208 465 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 HYIQ5T013 277 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 PADI6Q6TGC4 694 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 CABP7Q86V35 215 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 ZNF687Q8N1G0 1237 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 TMEM40Q8WWA1 233 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 CALML4Q96GE6 196 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 INO80BQ9C086 356 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 XPNPEP1Q9NQW7 623 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 PLSCR2Q9NRY7 297 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 DAXXQ9UER7 740 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 FBXO2Q9UK22 296 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 CFAP45Q9UL16 551 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 ST3GAL5Q9UNP4 418 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 NOC2LQ9Y3T9 749 aaKnown RBP13.79□□□□□ -0.2
VPS33A-207ENST00000542790 ATP6V1DQ9Y5K8 247 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 COL4A3BPQ9Y5P4 624 aa13.79□□□□□ -0.2
VPS33A-207ENST00000542790 E9PMD0 336 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 ENPP3O14638 875 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 USO1O60763 962 aaKnown RBP13.78□□□□□ -0.2
VPS33A-207ENST00000542790 YEATS4O95619 227 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 SRGAP2CP0DJJ0 459 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 DARSP14868 501 aaKnown RBP13.78□□□□□ -0.2
VPS33A-207ENST00000542790 CYP11B2P19099 503 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 GRIN1Q05586 938 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 LAMTOR4Q0VGL1 99 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 RAB30Q15771 203 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 FAM109BQ6ICB4 259 aaPredicted RBP13.78□□□□□ -0.2
VPS33A-207ENST00000542790 KSR1Q8IVT5 923 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 HERC6Q8IVU3 1022 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 KRI1Q8N9T8 703 aaKnown RBP13.78□□□□□ -0.2
VPS33A-207ENST00000542790 LINC00301Q8NCQ3 95 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 RASSF8Q8NHQ8 419 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 ZNF668Q96K58 619 aaPredicted RBP13.78□□□□□ -0.2
VPS33A-207ENST00000542790 NLRP4Q96MN2 994 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 CSRNP2Q9H175 543 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 ERVK-5Q9HDB9 667 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 TSHZ2Q9NRE2 1034 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 MSRAQ9UJ68 235 aa13.78□□□□□ -0.2
VPS33A-207ENST00000542790 A0A087WZ62 844 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-207ENST00000542790 GRXCR1A8MXD5 290 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 SPTLC2O15270 562 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 PPP6R2O75170 966 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 ARL2P36404 184 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 DEFB103AP81534 67 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 POU5F1BQ06416 359 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 CAMK2BQ13554 666 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 TFDP1Q14186 410 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 FOXD4L6Q3SYB3 417 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-207ENST00000542790 FOXD4L3Q6VB84 417 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-207ENST00000542790 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.77□□□□□ -0.21
VPS33A-207ENST00000542790 FAM228AQ86W67 206 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 LRCH3Q96II8 777 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 PNMA5Q96PV4 448 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 FDXACB1Q9BRP7 624 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-207ENST00000542790 ZBED2Q9BTP6 218 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 CCSER1Q9C0I3 900 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 ZDHHC9Q9Y397 364 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 PCDHA11Q9Y5I1 949 aa13.77□□□□□ -0.21
VPS33A-207ENST00000542790 DENND3A2RUS2 1198 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 SFPQP23246 707 aaKnown RBP eCLIP13.76□□□□□ -0.21
VPS33A-207ENST00000542790 TXLNAP40222 546 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 PHKA2P46019 1235 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 DNM1Q05193 864 aaKnown RBP13.76□□□□□ -0.21
VPS33A-207ENST00000542790 GRB10Q13322 594 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 TMEM119Q4V9L6 283 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 FAM102BQ5T8I3 360 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 MAEAQ7L5Y9 396 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 MYOCDQ8IZQ8 938 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 RNF149Q8NC42 400 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 KCNG4Q8TDN1 519 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 TOP1MTQ969P6 601 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 CLIC6Q96NY7 704 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 PLIN2Q99541 437 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 PBX4Q9BYU1 374 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 POLR3FQ9H1D9 316 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-207ENST00000542790 TMX1Q9H3N1 280 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 IFT122Q9HBG6 1241 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 CCDC39Q9UFE4 941 aa13.76□□□□□ -0.21
VPS33A-207ENST00000542790 TLL1O43897 1013 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 GJB5O95377 273 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 SSBP05455 408 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 PLA2G4BP0C869 781 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 ZSCAN20P17040 1043 aaPredicted RBP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 DNAJB2P25686 324 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 ANP32AP39687 249 aaKnown RBP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 RABGGTBP53611 331 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 NUCB2P80303 420 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 KARSQ15046 597 aaKnown RBP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 PCBP1Q15365 356 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 SPECC1Q5M775 1068 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 KCNK18Q7Z418 384 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 SRGAP1Q7Z6B7 1085 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 SYT2Q8N9I0 419 aaPredicted RBP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 ASAP3Q8TDY4 903 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 SYMPKQ92797 1274 aaKnown RBP13.75□□□□□ -0.21
VPS33A-207ENST00000542790 KIFAP3Q92845 792 aa13.75□□□□□ -0.21
VPS33A-207ENST00000542790 TIFAQ96CG3 184 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms