RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 TBC1D16Q8TBP0 767 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 CCT6BQ92526 530 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 HOOK2Q96ED9 719 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 THOC1Q96FV9 657 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 PAGR1Q9BTK6 254 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 DDX23Q9BUQ8 820 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 WRAP73Q9P2S5 460 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 TRAF3IP3Q9Y228 551 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 RPTORQ8N122 1335 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 CHUKO15111 745 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 TBCAO75347 108 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 NOVP48745 357 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 KLRC3Q07444 240 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 MESDQ14696 234 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 SNCBQ16143 134 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 ZC3H3Q8IXZ2 948 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 PRCCQ92733 491 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 CHMP6Q96FZ7 201 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 TRIM33Q9UPN9 1127 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 DAAM1Q9Y4D1 1078 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 MYO3BQ8WXR4 1341 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 BHMG1C9JSJ3 638 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 DDX39AO00148 427 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 SOX5P35711 763 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 PMS2P54278 862 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 JAG1P78504 1218 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 BIRC3Q13489 604 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 SEPT2Q15019 361 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 ZKSCAN8Q15776 578 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 LONRF1Q17RB8 773 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 C2CD6Q53TS8 623 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 PHLDB3Q6NSJ2 640 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 SYT2Q8N9I0 419 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 CTNNBL1Q8WYA6 563 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 CALR3Q96L12 384 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.22□□□□□ -0.614e-6■□□□□ 9
CDC42SE1-207ENST00000540998 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 NHSQ6T4R5 1651 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 ACSL3O95573 720 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 PRKCIP41743 596 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 VPS41P49754 854 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 SNX1Q13596 522 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 ERMARDQ5T6L9 678 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 DUPD1Q68J44 220 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 SLC30A5Q8TAD4 765 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 ATXN2LQ8WWM7 1075 aaKnown RBP11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 EIF2AK1Q9BQI3 630 aaKnown RBP11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 ERP44Q9BS26 406 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 ODF2LQ9ULJ1 636 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 ATXN2Q99700 1313 aaKnown RBP11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 CNTNAP4Q9C0A0 1308 aa11.21□□□□□ -0.61
CDC42SE1-207ENST00000540998 KIAA0391O15091 583 aaKnown RBP11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 CALUO43852 315 aaPredicted RBP11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 SMARCA1P28370 1054 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 FMO5P49326 533 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 PTENP60484 403 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 KCNJ2P63252 427 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 ORC2Q13416 577 aaPredicted RBP11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 RINT1Q6NUQ1 792 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 ARHGEF19Q8IW93 802 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 PRELID2Q8N945 189 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 GIMAP7Q8NHV1 300 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 TLCD1Q96CP7 247 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 STAMBPL1Q96FJ0 436 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 SGSM3Q96HU1 749 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 DYDC2Q96IM9 177 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 ZNF317Q96PQ6 595 aaPredicted RBP11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 ADAM33Q9BZ11 813 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 FAM129AQ9BZQ8 928 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 TYW1Q9NV66 732 aaKnown RBP11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 GRHL1Q9NZI5 618 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 CTTNBP2NLQ9P2B4 639 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 RABGAP1Q9Y3P9 1069 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 ALG6Q9Y672 507 aa11.21□□□□□ -0.62
CDC42SE1-207ENST00000540998 DDTLA6NHG4 134 aaPredicted RBP11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 A6NNZ2 444 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 BTNL10A8MVZ5 291 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 CCDC188H7C350 402 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 PPFIA2O75334 1257 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 TRIM37O94972 964 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 GH1P01241 217 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 CCDC172P0C7W6 258 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 DDR1Q08345 913 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 IFI16Q16666 785 aaKnown RBP11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 TUBB8Q3ZCM7 444 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 SLFN13Q68D06 897 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 DENND2CQ68D51 928 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 CDC42EP5Q6NZY7 148 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 LLGL2Q6P1M3 1020 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 PRUNE1Q86TP1 453 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 VPS36Q86VN1 386 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 SPATS2Q86XZ4 545 aaKnown RBP11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 ANKRD42Q8N9B4 389 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 GDAP1Q8TB36 358 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 RFFLQ8WZ73 363 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 TXLNGYQ9BZA5 131 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 INTS2Q9H0H0 1204 aaKnown RBP11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 SLITRK6Q9H5Y7 841 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 MCM8Q9UJA3 840 aa11.2□□□□□ -0.62
CDC42SE1-207ENST00000540998 THRAP3Q9Y2W1 955 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms