RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 BTG3Q14201 252 aaPredicted RBP16.78■□□□□ 0.28
UBE3B-212ENST00000540230 FAM102BQ5T8I3 360 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 MAEAQ7L5Y9 396 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 TMEM192Q8IY95 271 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 FBXO22Q8NEZ5 403 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 ERMNQ8TAM6 284 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 TCP11Q8WWU5 503 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 SNX21Q969T3 373 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 CCDC43Q96MW1 224 aaKnown RBP16.78■□□□□ 0.28
UBE3B-212ENST00000540230 MMTAG2Q9BU76 263 aaKnown RBP16.78■□□□□ 0.28
UBE3B-212ENST00000540230 ATP6V0A4Q9HBG4 840 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 GPRC5CQ9NQ84 441 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 HCSTQ9UBK5 93 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 LRFN2Q9ULH4 789 aa16.78■□□□□ 0.28
UBE3B-212ENST00000540230 MRPL42Q9Y6G3 142 aaKnown RBP16.78■□□□□ 0.28
UBE3B-212ENST00000540230 ATG2AQ2TAZ0 1938 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 LAD1O00515 517 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 STAG3L1P0CL83 205 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 XRCC6P12956 609 aaKnown RBP eCLIP16.77■□□□□ 0.28
UBE3B-212ENST00000540230 POU3F3P20264 500 aaPredicted RBP16.77■□□□□ 0.28
UBE3B-212ENST00000540230 CDC42EP1Q00587 391 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 PDIA5Q14554 519 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 HAUS3Q68CZ6 603 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 EXOC8Q8IYI6 725 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 RNF149Q8NC42 400 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 SNX29Q8TEQ0 813 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 NACC1Q96RE7 527 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 RNF19AQ9NV58 838 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 DBR1Q9UK59 544 aaKnown RBP16.77■□□□□ 0.28
UBE3B-212ENST00000540230 PCDHB7Q9Y5E2 793 aa16.77■□□□□ 0.28
UBE3B-212ENST00000540230 ZSCAN20P17040 1043 aaPredicted RBP16.76■□□□□ 0.27
UBE3B-212ENST00000540230 ATF7P17544 494 aaPredicted RBP16.76■□□□□ 0.27
UBE3B-212ENST00000540230 SFPQP23246 707 aaKnown RBP eCLIP16.76■□□□□ 0.27
UBE3B-212ENST00000540230 GLRA2P23416 452 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 CTNNB1P35222 781 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 ARL2P36404 184 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 RESTQ13127 1097 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 CAPSQ13938 189 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 FAM173BQ6P4H8 233 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 DTHD1Q6ZMT9 781 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 CMTR2Q8IYT2 770 aaKnown RBP16.76■□□□□ 0.27
UBE3B-212ENST00000540230 SLC17A8Q8NDX2 589 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 CLP1Q92989 425 aaKnown RBP16.76■□□□□ 0.27
UBE3B-212ENST00000540230 TMEM161AQ9NX61 479 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 KIAA1024Q9UPX6 916 aa16.76■□□□□ 0.27
UBE3B-212ENST00000540230 PIN4Q9Y237 131 aaKnown RBP16.76■□□□□ 0.27
UBE3B-212ENST00000540230 CATSPER4Q7RTX7 472 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 KCNK18Q7Z418 384 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 BRAPQ7Z569 592 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 ECHDC2Q86YB7 292 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 SAMD11Q96NU1 681 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 INO80BQ9C086 356 aaPredicted RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 POLR3FQ9H1D9 316 aaPredicted RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 POLD4Q9HCU8 107 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 DDX19AQ9NUU7 478 aaKnown RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 MTMR6Q9Y217 621 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 VWA3AA6NCI4 1184 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 TBKBP1A7MCY6 615 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 E9PMD0 336 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 ASAP2O43150 1006 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 GTPBP6O43824 516 aaPredicted RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 PDCP20941 246 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 GRIN1Q05586 938 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 PADI6Q6TGC4 694 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 FAM43BQ6ZT52 329 aaPredicted RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 SRGAP1Q7Z6B7 1085 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 ZNF598Q86UK7 904 aaKnown RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 RAB34Q9BZG1 259 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 BHMT2Q9H2M3 363 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 ELAC1Q9H777 363 aaKnown RBP16.75■□□□□ 0.27
UBE3B-212ENST00000540230 AGPAT5Q9NUQ2 364 aa16.75■□□□□ 0.27
UBE3B-212ENST00000540230 A0A0U1RQF3 1178 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 ARHGEF35A5YM69 484 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 C5orf67F2Z3F1 127 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 H3BNC9 293 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 MUTP22033 750 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 HOXA11P31270 313 aaPredicted RBP16.74■□□□□ 0.27
UBE3B-212ENST00000540230 BMPR1AP36894 532 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 PTENP60484 403 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 GPM6BQ13491 265 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 MXD4Q14582 209 aaPredicted RBP16.74■□□□□ 0.27
UBE3B-212ENST00000540230 SF3A1Q15459 793 aaKnown RBP16.74■□□□□ 0.27
UBE3B-212ENST00000540230 CLLU1OSQ5K130 101 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.74■□□□□ 0.27
UBE3B-212ENST00000540230 RNF169Q8NCN4 708 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 BSNDQ8WZ55 320 aa16.74■□□□□ 0.27
UBE3B-212ENST00000540230 MYO7AQ13402 2215 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 MEIS3P2A8K0S8 358 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 PHKA2P46019 1235 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 LONRF3Q496Y0 759 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 KRT79Q5XKE5 535 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 TWF2Q6IBS0 349 aaKnown RBP16.73■□□□□ 0.27
UBE3B-212ENST00000540230 IFNLR1Q8IU57 520 aaPredicted RBP16.73■□□□□ 0.27
UBE3B-212ENST00000540230 HSCBQ8IWL3 235 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 CASD1Q96PB1 797 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 PNMA5Q96PV4 448 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 CHST12Q9NRB3 414 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 DACT1Q9NYF0 836 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 CLIC4Q9Y696 253 aa16.73■□□□□ 0.27
UBE3B-212ENST00000540230 PLXNA4Q9HCM2 1894 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms