RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 SECISBP2LQ93073 1101 aaKnown RBP12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 NCDNQ9UBB6 729 aa12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 ST3GAL5Q9UNP4 418 aa12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 GINS2Q9Y248 185 aa12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 NOC2LQ9Y3T9 749 aaKnown RBP12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 DNAH14Q0VDD8 3507 aa12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 DMXL1Q9Y485 3027 aa12.8□□□□□ -0.36
TRAPPC4-213ENST00000533149 PNMA6FA0A0J9YX94 578 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 PALM3A6NDB9 673 aaPredicted RBP12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 ATP9AO75110 1047 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 CPLX2Q6PUV4 134 aaKnown RBP12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 LRRC55Q6ZSA7 311 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 GPR149Q86SP6 731 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 CUL5Q93034 780 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 CASD1Q96PB1 797 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 PIGSQ96S52 555 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 RIOX1Q9H6W3 641 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 SFXN1Q9H9B4 322 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 TBC1D17Q9HA65 648 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 MAD2L2Q9UI95 211 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 CDV3Q9UKY7 258 aaKnown RBP12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 SIT1Q9Y3P8 196 aa12.79□□□□□ -0.36
TRAPPC4-213ENST00000533149 CCDC196A0A1B0GTZ2 297 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 KRBA1A5PL33 1030 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 SPDYE4A6NLX3 237 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 CFHP08603 1231 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 PBX3P40426 434 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 ALDH7A1P49419 539 aaKnown RBP12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 HMGN5P82970 282 aaKnown RBP12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 LMNB2Q03252 620 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 PLCB4Q15147 1175 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 NTRK3Q16288 839 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 SPECC1Q5M775 1068 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 VARS2Q5ST30 1063 aaKnown RBP12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 PHLDB3Q6NSJ2 640 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 KANK3Q6NY19 840 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 MTHFD1LQ6UB35 978 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 TMC5Q6UXY8 1006 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 PPFIBP1Q86W92 1011 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 SLC39A11Q8N1S5 342 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 CHAMP1Q96JM3 812 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 RTKNQ9BST9 563 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 IRAK3Q9Y616 596 aa12.78□□□□□ -0.36
TRAPPC4-213ENST00000533149 ACACBO00763 2458 aa12.77□□□□□ -0.36
TRAPPC4-213ENST00000533149 CACNA1GO43497 2377 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 CARNS1A5YM72 827 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 MAFGO15525 162 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 NARSO43776 548 aaKnown RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 CDKL5O76039 1030 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 ADRB1P08588 477 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 FDPSP14324 419 aaKnown RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 EPCAMP16422 314 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 SYT1P21579 422 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 NUCB2P80303 420 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 MTMR1Q13613 665 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 LETM2Q2VYF4 491 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 LARP1BQ659C4 914 aaKnown RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 PLPPR4Q7Z2D5 763 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 FAM184AQ8NB25 1140 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 CTCFLQ8NI51 663 aaPredicted RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 SLC22A17Q8WUG5 538 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 TRAPPC12Q8WVT3 735 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 TMEM40Q8WWA1 233 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 TMEM169Q96HH4 297 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 MAP3K14Q99558 947 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 JPH1Q9HDC5 661 aaPredicted RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 RBM28Q9NW13 759 aaKnown RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 ORC3Q9UBD5 711 aaPredicted RBP12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 LOXHD1Q8IVV2 1947 aa12.77□□□□□ -0.37
TRAPPC4-213ENST00000533149 OTOGLQ3ZCN5 2332 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 PIK3CDO00329 1044 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 SPTLC1O15269 473 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 DCNP07585 359 aaKnown RBP12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 SRFP11831 508 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 IFNAR1P17181 557 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 KIF5BP33176 963 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 SLC26A2P50443 739 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 STAT5BP51692 787 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 CRYBB1P53674 252 aaPredicted RBP12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 POLGP54098 1239 aaPredicted RBP12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 SSRP1Q08945 709 aaKnown RBP12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 PKP1Q13835 747 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 NID2Q14112 1375 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 GRM4Q14833 912 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 ZNF528Q3MIS6 628 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 C15orf39Q6ZRI6 1047 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 VPS52Q8N1B4 723 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 CCDC82Q8N4S0 544 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 NXPE3Q969Y0 559 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 PCYT2Q99447 389 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 CEP250Q9BV73 2442 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 DLGAP2Q9P1A6 1054 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 CA14Q9ULX7 337 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 ZDHHC9Q9Y397 364 aa12.76□□□□□ -0.37
TRAPPC4-213ENST00000533149 PLEKHA8P1O95397 391 aa12.75□□□□□ -0.37
TRAPPC4-213ENST00000533149 ZSCAN20P17040 1043 aaPredicted RBP12.75□□□□□ -0.37
TRAPPC4-213ENST00000533149 ITGB5P18084 799 aa12.75□□□□□ -0.37
TRAPPC4-213ENST00000533149 PDCP20941 246 aa12.75□□□□□ -0.37
TRAPPC4-213ENST00000533149 KLRC1P26715 233 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms