RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 hCG_2014768A0A024R1R8 64 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 SNX16P57768 344 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 CAV1Q03135 178 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 SLC18A3Q16572 532 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 FOXP4Q8IVH2 680 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-211ENST00000513346 GUF1Q8N442 669 aaKnown RBP12.05□□□□□ -0.48
TCOF1-211ENST00000513346 MDM1Q8TC05 714 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 RNF181Q9P0P0 153 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 PDS5AQ29RF7 1337 aaKnown RBP12.05□□□□□ -0.48
TCOF1-211ENST00000513346 SPECC1L-ADORA2AF8WAN1 911 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 GNAT1P11488 350 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 MAPK4P31152 587 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ALX1Q15699 326 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ANKRD20A4Q4UJ75 823 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ANKRD20A2Q5SQ80 823 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ANKRD20A1Q5TYW2 823 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 DDX42Q86XP3 938 aaKnown RBP eCLIP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 AENQ8WTP8 325 aaKnown RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 CCNA1P78396 465 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 MIGA2Q7L4E1 593 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 PODNQ7Z5L7 613 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 CCDC117Q8IWD4 279 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 LRRC34Q8IZ02 419 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 RNF34Q969K3 372 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 LACRTQ9GZZ8 138 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 IFT122Q9HBG6 1241 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 SH3GLB2Q9NR46 395 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 EHD2Q9NZN4 543 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 USP32Q8NFA0 1604 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 K7ENM7 598 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 LRRN2O75325 713 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 IREB2P48200 963 aaKnown RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 CDK8P49336 464 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 LIG4P49917 911 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 UBXN2AP68543 259 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 KIAA1755Q5JYT7 1200 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 TMED8Q6PL24 325 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 TRIML2Q8N7C3 387 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 TTC1Q99614 292 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 C15orf41Q9Y2V0 281 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 SCINQ9Y6U3 715 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ARHGAP10A1A4S6 786 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 PLS3P13797 630 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ZNF211Q13398 564 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 LAMB3Q13751 1172 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 SLC15A2Q16348 729 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 KAZNQ674X7 775 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 HACE1Q8IYU2 909 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 COA7Q96BR5 231 aa12.04□□□□□ -0.48
TCOF1-211ENST00000513346 NAF1Q96HR8 494 aaKnown RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 ABT1Q9ULW3 272 aaKnown RBP12.04□□□□□ -0.48
TCOF1-211ENST00000513346 TMEM131LA2VDJ0 1609 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 A0A0G2JLW4 131 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 GSG1L2A8MUP6 293 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ORC4O43929 436 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 PRPF6O94906 941 aaKnown RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 TFRCP02786 760 aaKnown RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CHRNA5P30532 468 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 YWHAGP61981 247 aaKnown RBP eCLIP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ARHGAP4P98171 946 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CACNB1Q02641 598 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 DDR1Q08345 913 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CDKAL1Q5VV42 579 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ZMAT2Q96NC0 199 aaKnown RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ANKRD27Q96NW4 1050 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CD209Q9NNX6 404 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 SERPINB4P48594 390 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 STAT2P52630 851 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 HERVK_113P62684 666 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 GRIN1Q05586 938 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 DEUP1Q05D60 604 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 KCNH2Q12809 1159 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 C1orf146Q5VVC0 180 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 MAML1Q92585 1016 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 FAM161BQ96MY7 647 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 PPARGC1AQ9UBK2 798 aaKnown RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 DCTN4Q9UJW0 460 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 DUSP10Q9Y6W6 482 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 PPLO60437 1756 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 H0YCG3 227 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CNGA1P29973 690 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ILDR1Q86SU0 546 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 GGA2Q9UJY4 613 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 PAIP2BQ9ULR5 123 aaKnown RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 HPS5Q9UPZ3 1129 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 MST1RQ04912 1400 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 DEPDC5O75140 1603 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CFAP69A5D8W1 941 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 GMNNO75496 209 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 RHOBTB3O94955 611 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 CD44P16070 742 aaKnown RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ARL1P40616 181 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 RFX5P48382 616 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ARFIP2P53365 341 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 ANTXR2P58335 489 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 PFKFB3Q16875 520 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-211ENST00000513346 DGKHQ86XP1 1220 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 AFAP1L2Q8N4X5 818 aa12.03□□□□□ -0.48
TCOF1-211ENST00000513346 C2orf69Q8N8R5 385 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms