RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PEX3P56589 373 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 ASIC1P78348 528 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 RBL2Q08999 1139 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 MGAT3Q09327 533 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 CUL4BQ13620 913 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 CAPSQ13938 189 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 MXD4Q14582 209 aaPredicted RBP13.17□□□□□ -0.3
CUX1-210ENST00000497815 TRAF7Q6Q0C0 670 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 MYCT1Q8N699 235 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 RNF149Q8NC42 400 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 BADQ92934 168 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 IFT74Q96LB3 600 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 FDXACB1Q9BRP7 624 aaPredicted RBP13.17□□□□□ -0.3
CUX1-210ENST00000497815 OSBPL7Q9BZF2 842 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 TRIM9Q9C026 710 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 ADAMTS10Q9H324 1103 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 ODF2LQ9ULJ1 636 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 TRIP12Q14669 1992 aaPredicted RBP13.17□□□□□ -0.3
CUX1-210ENST00000497815 KAT6AQ92794 2004 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 LOXHD1Q8IVV2 1947 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 ASAP2O43150 1006 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 CSDE1O75534 798 aaKnown RBP13.16□□□□□ -0.3
CUX1-210ENST00000497815 PRR29P0C7W0 189 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 GHRP10912 638 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 CRYBB1P53674 252 aaPredicted RBP13.16□□□□□ -0.3
CUX1-210ENST00000497815 TFDP1Q14186 410 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 MBTPS1Q14703 1052 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 FAM26DQ5JW98 314 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 DEFB128Q7Z7B8 93 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 TMEM199Q8N511 208 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 TMEM40Q8WWA1 233 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 DNAJC19Q96DA6 116 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 C7orf25Q9BPX7 421 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 KIFC3Q9BVG8 833 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 PANK4Q9NVE7 773 aa13.16□□□□□ -0.3
CUX1-210ENST00000497815 MKI67P46013 3256 aaKnown RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 GTPBP6O43824 516 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 PLS3P13797 630 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 CSF2RAP15509 400 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 FGFR4P22455 802 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 NAMPTP43490 491 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 PHKA2P46019 1235 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 NPTX2P47972 431 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 CDC42EP1Q00587 391 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 MDM2Q00987 491 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 MLLT1Q03111 559 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 DMP1Q13316 513 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 PNOCQ13519 176 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 LPIN1Q14693 890 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 PPP2R5AQ15172 486 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 FBXO47Q5MNV8 452 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 ODR4Q5SWX8 454 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 MFSD5Q6N075 450 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 KANK3Q6NY19 840 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 ZNF410Q86VK4 478 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 SFR1Q86XK3 245 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 DEPTORQ8TB45 409 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 GPT2Q8TD30 523 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 ERCC4Q92889 916 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 CCDC34Q96HJ3 373 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 TIGD1Q96MW7 591 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 LBHD1Q9BQE6 289 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 GCOM2Q9BZD3 368 aaPredicted RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 IFT122Q9HBG6 1241 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 PARVGQ9HBI0 331 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 KMT5AQ9NQR1 393 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 TBC1D7Q9P0N9 293 aa13.15□□□□□ -0.3
CUX1-210ENST00000497815 LARSQ9P2J5 1176 aaKnown RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 NOC2LQ9Y3T9 749 aaKnown RBP13.15□□□□□ -0.3
CUX1-210ENST00000497815 INO80B-WBP1J3KQ70 363 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 SLC16A4O15374 487 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 NBNO60934 754 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 DARSP14868 501 aaKnown RBP13.14□□□□□ -0.31
CUX1-210ENST00000497815 EIF4BP23588 611 aaKnown RBP13.14□□□□□ -0.31
CUX1-210ENST00000497815 CD52P31358 61 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 FPGSQ05932 587 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 NFX1Q12986 1120 aaKnown RBP13.14□□□□□ -0.31
CUX1-210ENST00000497815 PAK2Q13177 524 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 POSTNQ15063 836 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 CAMK4Q16566 473 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 HERC4Q5GLZ8 1057 aaPredicted RBP13.14□□□□□ -0.31
CUX1-210ENST00000497815 ZBTB8OSQ8IWT0 167 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 CCDC65Q8IXS2 484 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 HPS3Q969F9 1004 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 INO80BQ9C086 356 aaPredicted RBP13.14□□□□□ -0.31
CUX1-210ENST00000497815 MINDY3Q9H8M7 445 aa13.14□□□□□ -0.31
CUX1-210ENST00000497815 AGO3Q9H9G7 860 aaKnown RBP13.14□□□□□ -0.31
CUX1-210ENST00000497815 ADGRA3Q8IWK6 1321 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 EVPLQ92817 2033 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 H0YGN5 161 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 K7ENM7 598 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 TRAK2O60296 914 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 RPS6KA5O75582 802 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 RPN1P04843 607 aaKnown RBP13.13□□□□□ -0.31
CUX1-210ENST00000497815 ACRP10323 421 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 GAP43P17677 238 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 NMT1P30419 496 aaKnown RBP13.13□□□□□ -0.31
CUX1-210ENST00000497815 ZNF131P52739 623 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 SMTNP53814 917 aa13.13□□□□□ -0.31
CUX1-210ENST00000497815 PTENP60484 403 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms