RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 RGS18Q9NS28 235 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 PTPRSQ13332 1948 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 FOSL2P15408 326 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 UBA7P41226 1012 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 SRGAP1Q7Z6B7 1085 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 RASSF8Q8NHQ8 419 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 AK8Q96MA6 479 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 NT5C3AQ9H0P0 336 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 IFT122Q9HBG6 1241 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 MTUS1Q9ULD2 1270 aa17.7■□□□□ 0.42
LIME1-209ENST00000494776 LINC01553A4QN01 128 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 E9PMD0 336 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 ARHGEF15O94989 841 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 ARL2P36404 184 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 LONP1P36776 959 aaKnown RBP17.69■□□□□ 0.42
LIME1-209ENST00000494776 BECN1Q14457 450 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 CABP7Q86V35 215 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 CALML4Q96GE6 196 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 TGS1Q96RS0 853 aaKnown RBP17.69■□□□□ 0.42
LIME1-209ENST00000494776 PLIN2Q99541 437 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 MMTAG2Q9BU76 263 aaKnown RBP17.69■□□□□ 0.42
LIME1-209ENST00000494776 DACT1Q9NYF0 836 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 PIN4Q9Y237 131 aaKnown RBP17.69■□□□□ 0.42
LIME1-209ENST00000494776 ARID2Q68CP9 1835 aa17.69■□□□□ 0.42
LIME1-209ENST00000494776 C9IYK1 514 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 DGKIO75912 1065 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 ERLIN2O94905 339 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 EYA4O95677 639 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 CYP11B2P19099 503 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 IGFBP4P22692 258 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 MARCKSP29966 332 aaPredicted RBP17.68■□□□□ 0.42
LIME1-209ENST00000494776 BTG3Q14201 252 aaPredicted RBP17.68■□□□□ 0.42
LIME1-209ENST00000494776 DSC3Q14574 896 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 TWF2Q6IBS0 349 aaKnown RBP17.68■□□□□ 0.42
LIME1-209ENST00000494776 FIBCD1Q8N539 461 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 ASAP3Q8TDY4 903 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 ZNF396Q96N95 335 aaPredicted RBP17.68■□□□□ 0.42
LIME1-209ENST00000494776 GPRC5CQ9NQ84 441 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 CHST12Q9NRB3 414 aa17.68■□□□□ 0.42
LIME1-209ENST00000494776 LRRIQ4A6NIV6 560 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 INO80B-WBP1J3KQ70 363 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 SSBP05455 408 aaKnown RBP eCLIP17.67■□□□□ 0.42
LIME1-209ENST00000494776 ZSCAN22P10073 491 aaPredicted RBP17.67■□□□□ 0.42
LIME1-209ENST00000494776 GLRA2P23416 452 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 PTENP60484 403 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 NCBP1Q09161 790 aaKnown RBP17.67■□□□□ 0.42
LIME1-209ENST00000494776 CAPSQ13938 189 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 PTPAQ15257 358 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 RNF169Q8NCN4 708 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 SP7Q8TDD2 431 aaPredicted RBP17.67■□□□□ 0.42
LIME1-209ENST00000494776 USP28Q96RU2 1077 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 ADGRA3Q8IWK6 1321 aa17.67■□□□□ 0.42
LIME1-209ENST00000494776 RFXAPO00287 272 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 SLC26A4O43511 780 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 ERVK-21P61565 698 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 GRIN1Q05586 938 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 POU5F1BQ06416 359 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 STK38Q15208 465 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 FOXD4L6Q3SYB3 417 aaPredicted RBP17.66■□□□□ 0.42
LIME1-209ENST00000494776 PAN2Q504Q3 1202 aaKnown RBP17.66■□□□□ 0.42
LIME1-209ENST00000494776 HYIQ5T013 277 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 FOXD4L3Q6VB84 417 aaPredicted RBP17.66■□□□□ 0.42
LIME1-209ENST00000494776 KCTD17Q8N5Z5 321 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 ZNF689Q96CS4 500 aaPredicted RBP17.66■□□□□ 0.42
LIME1-209ENST00000494776 IFT74Q96LB3 600 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 SAMD11Q96NU1 681 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 ELAC1Q9H777 363 aaKnown RBP17.66■□□□□ 0.42
LIME1-209ENST00000494776 MINDY3Q9H8M7 445 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 TMEM161AQ9NX61 479 aa17.66■□□□□ 0.42
LIME1-209ENST00000494776 F13A1P00488 732 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 FAM189BP81408 668 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 GRB10Q13322 594 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 PPP2R5AQ15172 486 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 PCBP1Q15365 356 aaKnown RBP eCLIP17.65■□□□□ 0.421e-6■■■□□ 17.8
LIME1-209ENST00000494776 KCNK18Q7Z418 384 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 SPRED2Q7Z698 418 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 ECHDC2Q86YB7 292 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 ZBTB8OSQ8IWT0 167 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 CMTR2Q8IYT2 770 aaKnown RBP17.65■□□□□ 0.42
LIME1-209ENST00000494776 ABI1Q8IZP0 508 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 FBXO22Q8NEZ5 403 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 KIFAP3Q92845 792 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 PNMA5Q96PV4 448 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 C17orf80Q9BSJ5 609 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 CSRNP2Q9H175 543 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 POLD4Q9HCU8 107 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 AGPAT5Q9NUQ2 364 aa17.65■□□□□ 0.42
LIME1-209ENST00000494776 SRPRBQ9Y5M8 271 aaKnown RBP17.65■□□□□ 0.42
LIME1-209ENST00000494776 TTC3P53804 2025 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 A0A0U1RQF3 1178 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 TBKBP1A7MCY6 615 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 HOXA2O43364 376 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 GTPBP6O43824 516 aaPredicted RBP17.64■□□□□ 0.41
LIME1-209ENST00000494776 SKIP12755 728 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 TXLNAP40222 546 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 GATMP50440 423 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 SLC39A14Q15043 492 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 SPECC1Q5M775 1068 aa17.64■□□□□ 0.41
LIME1-209ENST00000494776 SPOUT1Q5T280 376 aaKnown RBP17.64■□□□□ 0.41
LIME1-209ENST00000494776 TMEM192Q8IY95 271 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms