RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 COL23A1Q86Y22 540 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 SUGP1Q8IWZ8 645 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 KIRREL3Q8IZU9 778 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 RAB3IL1Q8TBN0 382 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 IRAK4Q9NWZ3 460 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 CEP72Q9P209 647 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 DIAPH2O60879 1101 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 PSAPP07602 524 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 TRIM49P0CI25 452 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 TRIM49CP0CI26 452 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 SCYL2Q6P3W7 929 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 ADPGKQ9BRR6 497 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 VIRMAQ69YN4 1812 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 NMT1P30419 496 aaKnown RBP17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 MAP7Q14244 749 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 SEC16BQ96JE7 1060 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 TXLNGQ9NUQ3 528 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 DAPK3O43293 454 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 CYB5D1Q6P9G0 228 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 DPP9Q86TI2 863 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 NXF1Q9UBU9 619 aaKnown RBP17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNRF3Q9ULT6 936 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 DUSP10Q9Y6W6 482 aa17.52■□□□□ 0.39
CCDC88B-209ENST00000494080 ANKRD26Q9UPS8 1709 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 CA8P35219 290 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 NAALADL2Q58DX5 795 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 FAM47CQ5HY64 1035 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 PRAMEF18Q5VWM3 479 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 RNF169Q8NCN4 708 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 MYCBPAPQ8TBZ2 947 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 TMEM39BQ9GZU3 492 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 TYW1Q9NV66 732 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 FAM205AQ6ZU69 1335 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 WDR64B1ANS9 1081 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 POC1B-GALNT4F8VUJ3 575 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 EVI5O60447 810 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 ACSL3O95573 720 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 RPUSD2Q8IZ73 545 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 DNAJC17Q9NVM6 304 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 SCP2P22307 547 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 QARSP47897 775 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 IRX1P78414 480 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 EZH2Q15910 746 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 ARHGEF18Q6ZSZ5 1173 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 FBXL16Q8N461 479 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 TSNARE1Q96NA8 513 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 COMMD10Q9Y6G5 202 aa17.51■□□□□ 0.39
CCDC88B-209ENST00000494080 CD44P16070 742 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 CD58P19256 250 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 ADCY2Q08462 1091 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 CYP4F22Q6NT55 531 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 MMGT1Q8N4V1 131 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 PROCA1Q8NCQ7 364 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 RNF34Q969K3 372 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 APOL6Q9BWW8 343 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 AMACRQ9UHK6 382 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 AKT3Q9Y243 479 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 C3P01024 1663 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 PPP1R3GB7ZBB8 358 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 SLC37A4O43826 429 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 FAM47EQ6ZV65 393 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 XXYLT1Q8NBI6 393 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 GIMAP8Q8ND71 665 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 SLC17A8Q8NDX2 589 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 C7orf25Q9BPX7 421 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 DDX23Q9BUQ8 820 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 SKIP12755 728 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 MAPK4P31152 587 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 LRRC14Q15048 493 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 LACRTQ9GZZ8 138 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 RAB20Q9NX57 234 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNF70Q9UC06 446 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 P4HBP07237 508 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 P4HA1P13674 534 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 HMGCS2P54868 508 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 BPIFB4P59827 614 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 SESTD1Q86VW0 696 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 CCDC89Q8N998 374 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 NLRP4Q96MN2 994 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 RILPQ96NA2 401 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 SH3GL3Q99963 347 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 IL17RBQ9NRM6 502 aa17.5■□□□□ 0.39
CCDC88B-209ENST00000494080 SETSIPP0DME0 302 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 YWHAEP62258 255 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 SNX1Q13596 522 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 LRRC23Q53EV4 343 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 MAIP1Q8WWC4 291 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 PRMT6Q96LA8 375 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 TBC1D22BQ9NU19 505 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 ZNF148Q9UQR1 794 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 CFAP73A6NFT4 308 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 PFDN1O60925 122 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 ENTPD3O75355 529 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 HOXA7P31268 230 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 NBPF3Q9H094 633 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 GABBR1Q9UBS5 961 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 ARHGAP42A6NI28 874 aa17.49■□□□□ 0.39
CCDC88B-209ENST00000494080 ATF2P15336 505 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms