RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 POLR3CQ9BUI4 534 aaPredicted RBP27.51■■□□□ 1.99
UPF3A-209ENST00000492270 THEGQ9P2T0 379 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 HCSTQ9UBK5 93 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 MYO7AQ13402 2215 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 TBKBP1A7MCY6 615 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 C5orf67F2Z3F1 127 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 GAS2O43903 313 aaKnown RBP27.5■■□□□ 1.99
UPF3A-209ENST00000492270 SFPQP23246 707 aaKnown RBP eCLIP27.5■■□□□ 1.99
UPF3A-209ENST00000492270 FXR2P51116 673 aaKnown RBP eCLIP27.5■■□□□ 1.99
UPF3A-209ENST00000492270 FERMT3Q86UX7 667 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 TCP11Q8WWU5 503 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 ELAC1Q9H777 363 aaKnown RBP27.5■■□□□ 1.99
UPF3A-209ENST00000492270 MINDY3Q9H8M7 445 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 ATP6V0A4Q9HBG4 840 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 EIF4ENIF1Q9NRA8 985 aaKnown RBP27.5■■□□□ 1.99
UPF3A-209ENST00000492270 RNF19AQ9NV58 838 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 RWDD3Q9Y3V2 267 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 XIRP2A4UGR9 3374 aa27.5■■□□□ 1.99
UPF3A-209ENST00000492270 USO1O60763 962 aaKnown RBP27.49■■□□□ 1.99
UPF3A-209ENST00000492270 LARP1BQ659C4 914 aaKnown RBP27.49■■□□□ 1.99
UPF3A-209ENST00000492270 ECHDC2Q86YB7 292 aa27.49■■□□□ 1.99
UPF3A-209ENST00000492270 ERMNQ8TAM6 284 aa27.49■■□□□ 1.99
UPF3A-209ENST00000492270 INO80BQ9C086 356 aaPredicted RBP27.49■■□□□ 1.99
UPF3A-209ENST00000492270 PIN4Q9Y237 131 aaKnown RBP27.49■■□□□ 1.99
UPF3A-209ENST00000492270 BRWD1Q9NSI6 2320 aa27.49■■□□□ 1.99
UPF3A-209ENST00000492270 VCANP13611 3396 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 DGAT1O75907 488 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 RPA1P27694 616 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 IL17AQ16552 155 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 ECM1Q16610 540 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 CATSPER4Q7RTX7 472 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 RNF149Q8NC42 400 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 RNF169Q8NCN4 708 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 ASAP3Q8TDY4 903 aa27.48■■□□□ 1.99
UPF3A-209ENST00000492270 MRPL38Q96DV4 380 aaKnown RBP27.48■■□□□ 1.99
UPF3A-209ENST00000492270 GRM6O15303 877 aa27.47■■□□□ 1.99
UPF3A-209ENST00000492270 RB1P06400 928 aa27.47■■□□□ 1.99
UPF3A-209ENST00000492270 ATF7P17544 494 aaPredicted RBP27.47■■□□□ 1.99
UPF3A-209ENST00000492270 RILPL1Q5EBL4 403 aa27.47■■□□□ 1.99
UPF3A-209ENST00000492270 C11orf84Q9BUA3 381 aaPredicted RBP27.47■■□□□ 1.99
UPF3A-209ENST00000492270 RNF216Q9NWF9 866 aaPredicted RBP27.47■■□□□ 1.99
UPF3A-209ENST00000492270 LRWD1Q9UFC0 647 aa27.47■■□□□ 1.99
UPF3A-209ENST00000492270 TCF20Q9UGU0 1960 aaKnown RBP27.47■■□□□ 1.99
UPF3A-209ENST00000492270 XRCC6P12956 609 aaKnown RBP eCLIP27.46■■□□□ 1.99
UPF3A-209ENST00000492270 CCT6AP40227 531 aaKnown RBP27.46■■□□□ 1.99
UPF3A-209ENST00000492270 TFF2Q03403 129 aa27.46■■□□□ 1.99
UPF3A-209ENST00000492270 SRGAP1Q7Z6B7 1085 aa27.46■■□□□ 1.99
UPF3A-209ENST00000492270 ZNF598Q86UK7 904 aaKnown RBP27.46■■□□□ 1.99
UPF3A-209ENST00000492270 IGSF22Q8N9C0 903 aa27.46■■□□□ 1.99
UPF3A-209ENST00000492270 NACC1Q96RE7 527 aa27.46■■□□□ 1.99
UPF3A-209ENST00000492270 ALG13Q9NP73 1137 aaKnown RBP27.46■■□□□ 1.99
UPF3A-209ENST00000492270 CHST12Q9NRB3 414 aa27.46■■□□□ 1.99
UPF3A-209ENST00000492270 DACT1Q9NYF0 836 aa27.46■■□□□ 1.99
UPF3A-209ENST00000492270 DBR1Q9UK59 544 aaKnown RBP27.46■■□□□ 1.99
UPF3A-209ENST00000492270 A0A0U1RQF3 1178 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 PP2D1A8MPX8 630 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 ASAP2O43150 1006 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 CSPG5O95196 566 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 ARL2P36404 184 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 CAPSQ13938 189 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 PTPROQ16827 1216 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 CLLU1OSQ5K130 101 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 HAUS3Q68CZ6 603 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 TWF2Q6IBS0 349 aaKnown RBP27.45■■□□□ 1.98
UPF3A-209ENST00000492270 MAEAQ7L5Y9 396 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 CASD1Q96PB1 797 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 COL25A1Q9BXS0 654 aaPredicted RBP27.45■■□□□ 1.98
UPF3A-209ENST00000492270 POLR3FQ9H1D9 316 aaPredicted RBP27.45■■□□□ 1.98
UPF3A-209ENST00000492270 GPRC5CQ9NQ84 441 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 AGPAT5Q9NUQ2 364 aa27.45■■□□□ 1.98
UPF3A-209ENST00000492270 PHKA2P46019 1235 aa27.44■■□□□ 1.98
UPF3A-209ENST00000492270 MXD4Q14582 209 aaPredicted RBP27.44■■□□□ 1.98
UPF3A-209ENST00000492270 PLVAPQ9BX97 442 aa27.44■■□□□ 1.98
UPF3A-209ENST00000492270 TMEM117Q9H0C3 514 aa27.44■■□□□ 1.98
UPF3A-209ENST00000492270 TYW1Q9NV66 732 aaKnown RBP27.44■■□□□ 1.98
UPF3A-209ENST00000492270 LAD1O00515 517 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 DLL1O00548 723 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 ITGB1P05556 798 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 GLRA2P23416 452 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 CDC25AP30304 524 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 PRPHP41219 470 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 ATP2C1P98194 919 aaPredicted RBP27.43■■□□□ 1.98
UPF3A-209ENST00000492270 PDIA5Q14554 519 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 LONRF3Q496Y0 759 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 SPOUT1Q5T280 376 aaKnown RBP27.43■■□□□ 1.98
UPF3A-209ENST00000492270 LRRC55Q6ZSA7 311 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 KLHL23Q8NBE8 558 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 HELQQ8TDG4 1101 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 SNX29Q8TEQ0 813 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 ATXN2LQ8WWM7 1075 aaKnown RBP27.43■■□□□ 1.98
UPF3A-209ENST00000492270 LPPQ93052 612 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 P2RX5Q93086 422 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 CWH43Q9H720 699 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 PLAGL2Q9UPG8 496 aa27.43■■□□□ 1.98
UPF3A-209ENST00000492270 PTENP60484 403 aa27.42■■□□□ 1.98
UPF3A-209ENST00000492270 TRAIPQ9BWF2 469 aa27.42■■□□□ 1.98
UPF3A-209ENST00000492270 KIAA1024Q9UPX6 916 aa27.42■■□□□ 1.98
UPF3A-209ENST00000492270 VPS37CA5D8V6 355 aaPredicted RBP27.41■■□□□ 1.98
UPF3A-209ENST00000492270 MEIS3P2A8K0S8 358 aa27.41■■□□□ 1.98
UPF3A-209ENST00000492270 HOXA2O43364 376 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms