RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 MYOGP15173 224 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 GLRA2P23416 452 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PHKA2P46019 1235 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 FAM102BQ5T8I3 360 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ATL3Q6DD88 541 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SRGAP1Q7Z6B7 1085 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RTN4RL1Q86UN2 441 aaPredicted RBP18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 KRI1Q8N9T8 703 aaKnown RBP18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RASSF8Q8NHQ8 419 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CLIC6Q96NY7 704 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ADAM2Q99965 735 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CCSER1Q9C0I3 900 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 DAXXQ9UER7 740 aaPredicted RBP18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 LAMA3Q16787 3333 aa18.07■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SPTLC2O15270 562 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 UPP2O95045 317 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 POU5F1BQ06416 359 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CAPSQ13938 189 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 DSC3Q14574 896 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 KARSQ15046 597 aaKnown RBP18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SPECC1Q5M775 1068 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 Q7L0L9 218 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 DEFB123Q8N688 67 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RAD9AQ99638 391 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SLC28A3Q9HAS3 691 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RGS18Q9NS28 235 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 C1orf112Q9NSG2 853 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ZDHHC9Q9Y397 364 aa18.06■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PPP6R2O75170 966 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SSBP05455 408 aaKnown RBP eCLIP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CA3P07451 260 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ZSCAN20P17040 1043 aaPredicted RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PLCG1P19174 1290 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TXLNAP40222 546 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SARSP49591 514 aaKnown RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 HTRA4P83105 476 aaPredicted RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 DNM1Q05193 864 aaKnown RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PPP2R2DQ66LE6 453 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CATSPER4Q7RTX7 472 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 IFNLR1Q8IU57 520 aaPredicted RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 NPAS4Q8IUM7 802 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SYMPKQ92797 1274 aaKnown RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 EPSTI1Q96J88 318 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 YME1L1Q96TA2 773 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TTYH1Q9H313 450 aaPredicted RBP18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ZNF576Q9H609 170 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 MINDY3Q9H8M7 445 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 INSL6Q9Y581 213 aa18.05■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PLA2G4BP0C869 781 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 STAG3L1P0CL83 205 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PTENP60484 403 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RINT1Q6NUQ1 792 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 C1orf186Q6ZWK4 172 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 USP49Q70CQ1 688 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SLC24A5Q71RS6 500 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SYT2Q8N9I0 419 aaPredicted RBP18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 KCNG4Q8TDN1 519 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 KIFAP3Q92845 792 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 FAM161BQ96MY7 647 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RUSC1Q9BVN2 902 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 NFKBIZQ9BYH8 718 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SEMA6BQ9H3T3 888 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CHST12Q9NRB3 414 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RNF216Q9NWF9 866 aaPredicted RBP18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CCDC39Q9UFE4 941 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CFAP45Q9UL16 551 aa18.04■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 COL4A6Q14031 1691 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 LCHNA4D1U4 455 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 LRRIQ4A6NIV6 560 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 C9IYK1 514 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 HIP1RO75146 1068 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 IBSPP21815 317 aaPredicted RBP18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SLC12A3P55017 1021 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PPP2R5AQ15172 486 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 LRRC15Q8TF66 581 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TIPINQ9BVW5 301 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 DACT1Q9NYF0 836 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 LRFN2Q9ULH4 789 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PIN4Q9Y237 131 aaKnown RBP18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ATP6V1DQ9Y5K8 247 aa18.03■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 INO80B-WBP1J3KQ70 363 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CUTAO60888 179 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ERLIN2O94905 339 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ARHGEF15O94989 841 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 GUCY2CP25092 1073 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 NAMPTP43490 491 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TTC3P53804 2025 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 MBTD1Q05BQ5 628 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PCBP1Q15365 356 aaKnown RBP eCLIP18.02■□□□□ 0.483e-7■■■■□ 19.3
MSH5-SAPCD1-206ENST00000491552 CDCA2Q69YH5 1023 aaPredicted RBP18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ZBTB8OSQ8IWT0 167 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CRIPAKQ8N1N5 446 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SP7Q8TDD2 431 aaPredicted RBP18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 BSNDQ8WZ55 320 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RAD54LQ92698 747 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 IFT74Q96LB3 600 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 DRC1Q96MC2 740 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 BLOC1S4Q9NUP1 217 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 AGPAT5Q9NUQ2 364 aa18.02■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 MTMR10Q9NXD2 777 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms