RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 CCND2P30279 289 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 TCF7P36402 384 aaPredicted RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 NOVA1P51513 510 aaKnown RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 BCAR1P56945 870 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 KRT76Q01546 638 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 PRKCQQ04759 706 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 ZNF252P-AS1Q0IIN9 211 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 NEDD9Q14511 834 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 DSC3Q14574 896 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 PARM1Q6UWI2 310 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 PPFIBP1Q86W92 1011 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 ADGRF4Q8IZF3 695 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 CMASQ8NFW8 434 aaPredicted RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 TRAPPC12Q8WVT3 735 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 STAMQ92783 540 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 ZNF707Q96C28 371 aaPredicted RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 INPP4AQ96PE3 977 aaPredicted RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 KLHL5Q96PQ7 755 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 SEC62Q99442 399 aaKnown RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 NAPBQ9H115 298 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 FAM217BQ9NTX9 383 aaPredicted RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 GINS2Q9Y248 185 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 MRPL11Q9Y3B7 192 aaKnown RBP8.41□□□□□ -1.06
COL9A1-209ENST00000489861 PCDHA1Q9Y5I3 950 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 EML5Q05BV3 1969 aa8.41□□□□□ -1.06
COL9A1-209ENST00000489861 TTC41PQ6P2S7 1318 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 GSTTP1A0A1W2PQM5 241 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 RPS6KA5O75582 802 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 RFPL2O75678 378 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 CAPNS1P04632 268 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 CNPP09543 421 aaKnown RBP8.4□□□□□ -1.06
COL9A1-209ENST00000489861 ATXN8OSP0DMR3 200 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 KLRC2P26717 231 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 POLGP54098 1239 aaPredicted RBP8.4□□□□□ -1.06
COL9A1-209ENST00000489861 NRLP54845 237 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 AAMPQ13685 434 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 GIT2Q14161 759 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 BMS1Q14692 1282 aaKnown RBP8.4□□□□□ -1.06
COL9A1-209ENST00000489861 COL28A1Q2UY09 1125 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 RSPO2Q6UXX9 243 aaPredicted RBP8.4□□□□□ -1.06
COL9A1-209ENST00000489861 DDX53Q86TM3 631 aaKnown RBP8.4□□□□□ -1.06
COL9A1-209ENST00000489861 ZNF687Q8N1G0 1237 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 FAM160A2Q8N612 972 aaPredicted RBP8.4□□□□□ -1.06
COL9A1-209ENST00000489861 KBTBD3Q8NAB2 608 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 TMEM169Q96HH4 297 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 RHOBTB2Q9BYZ6 727 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 MAN1C1Q9NR34 630 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 RTEL1Q9NZ71 1219 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 PCDHA2Q9Y5H9 948 aa8.4□□□□□ -1.06
COL9A1-209ENST00000489861 ATG2BQ96BY7 2078 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 NUP205Q92621 2012 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 RRN3P2A6NIE6 340 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 CHURC1-FNTBB4DL54 471 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 INPPL1O15357 1258 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 RNF113AO15541 343 aaKnown RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 ORC4O43929 436 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 LILRB3O75022 631 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 RPLP2P05387 115 aaKnown RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 FGRP09769 529 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 ZNF806P0C7X5 589 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 HOXC13P31276 330 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 FNTBP49356 437 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 ALDH7A1P49419 539 aaKnown RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 GPATCH4Q5T3I0 446 aaKnown RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 LARP1BQ659C4 914 aaKnown RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 TPRG1Q6ZUI0 275 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 GET4Q7L5D6 327 aaPredicted RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 FAM228AQ86W67 206 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 TICAM2Q86XR7 235 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 C12orf50Q8NA57 414 aaPredicted RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 SMG7Q92540 1137 aaKnown RBP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 IGSF21Q96ID5 467 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 ARRDC1-AS1Q9H2J1 176 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 SMOC1Q9H4F8 434 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 ERAP1Q9NZ08 941 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.39□□□□□ -1.07
COL9A1-209ENST00000489861 SSUH2Q9Y2M2 353 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 GON4LQ3T8J9 2241 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 WDR81Q562E7 1941 aa8.39□□□□□ -1.07
COL9A1-209ENST00000489861 AXIN1O15169 862 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 HOXA2O43364 376 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 PPP1R11O60927 126 aaPredicted RBP8.38□□□□□ -1.07
COL9A1-209ENST00000489861 PRB1P04280 392 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 SSBP05455 408 aaKnown RBP eCLIP8.38□□□□□ -1.07
COL9A1-209ENST00000489861 NT5C2P49902 561 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 SATB1Q01826 763 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 PLCB4Q15147 1175 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 MAMSTRQ6ZN01 415 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 FCHSD1Q86WN1 690 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 PROSER1Q86XN7 944 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 ABI1Q8IZP0 508 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 HELQQ8TDG4 1101 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 NELL2Q99435 816 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 PCYT2Q99447 389 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 HNRNPABQ99729 332 aaKnown RBP8.38□□□□□ -1.07
COL9A1-209ENST00000489861 CHRDQ9H2X0 955 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 JMJD4Q9H9V9 463 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 VAT1LQ9HCJ6 419 aa8.38□□□□□ -1.07
COL9A1-209ENST00000489861 TCP11L1Q9NUJ3 509 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms