RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 RFX8Q6ZV50 586 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 METTL16Q86W50 562 aaKnown RBP18.81■□□□□ 0.6
NPHP4-209ENST00000489180 C1orf54Q8WWF1 131 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 CCNA1P78396 465 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 ICE2Q659A1 982 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 EXOC8Q8IYI6 725 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 FBXL13Q8NEE6 735 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 DCAF4Q8WV16 495 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 TDP2O95551 362 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 SURF1Q15526 300 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 KLC3Q6P597 504 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 KIF2CQ99661 725 aa18.81■□□□□ 0.6
NPHP4-209ENST00000489180 FAM49AQ9H0Q0 323 aaPredicted RBP18.81■□□□□ 0.6
NPHP4-209ENST00000489180 DCP1AQ9NPI6 582 aaPredicted RBP18.81■□□□□ 0.6
NPHP4-209ENST00000489180 KIF1BO60333 1816 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 STOX1Q6ZVD7 989 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 TMEM179Q6ZVK1 233 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 HPS3Q969F9 1004 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 CHUKO15111 745 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 BNIP3LO60238 219 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 GLYCTKQ8IVS8 523 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 CEP70Q8NHQ1 597 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 UPF3AQ9H1J1 476 aaKnown RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 GGT7Q9UJ14 662 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 ZSCAN20P17040 1043 aaPredicted RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 NSUN2Q08J23 767 aaKnown RBP eCLIP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 SAAL1Q96ER3 474 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 LRRC1Q9BTT6 524 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 ATP6V0A4Q9HBG4 840 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 MID2Q9UJV3 735 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 GRID2IPA4D2P6 1211 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 EPHB1P54762 984 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 TAF1BQ53T94 588 aaPredicted RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 ZBED8Q8IZ13 594 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 PPM1NQ8N819 430 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 RAVER2Q9HCJ3 691 aaKnown RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 OLA1Q9NTK5 396 aaKnown RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 KLHL8Q9P2G9 620 aaPredicted RBP18.8■□□□□ 0.6
NPHP4-209ENST00000489180 ARAP3Q8WWN8 1544 aa18.8■□□□□ 0.6
NPHP4-209ENST00000489180 CYP27B1O15528 508 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 HAUS5O94927 633 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 TRIM49P0CI25 452 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 TRIM49CP0CI26 452 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 FGFR4P22455 802 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 VAMP7P51809 220 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 GPS1Q13098 491 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 GRM4Q14833 912 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 RNF139Q8WU17 664 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 MS4A14Q96JA4 679 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 MINPP1Q9UNW1 487 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 ANKARQ7Z5J8 1434 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 LMNAP02545 664 aaKnown RBP18.79■□□□□ 0.6
NPHP4-209ENST00000489180 CCDC137Q6PK04 289 aaKnown RBP18.79■□□□□ 0.6
NPHP4-209ENST00000489180 GTSE1Q9NYZ3 720 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 NPHP3-ACAD11A0A0J9YXS1 232 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 ARL13BQ3SXY8 428 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 ANKRD40Q6AI12 368 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 ARMCX2Q7L311 632 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 WDR19Q8NEZ3 1342 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 CLDN3O15551 220 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 PDIA2Q13087 525 aaKnown RBP18.79■□□□□ 0.6
NPHP4-209ENST00000489180 DSTYKQ6XUX3 929 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 FOXP4Q8IVH2 680 aaPredicted RBP18.79■□□□□ 0.6
NPHP4-209ENST00000489180 LRRC37BQ96QE4 947 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 AMACRQ9UHK6 382 aa18.79■□□□□ 0.6
NPHP4-209ENST00000489180 JAK3P52333 1124 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 ZNF699Q32M78 642 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 LRRC23Q53EV4 343 aaPredicted RBP18.78■□□□□ 0.6
NPHP4-209ENST00000489180 TMEM35BQ8NCS4 154 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 GSG1L2A8MUP6 293 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 LDHAP00338 332 aaKnown RBP18.78■□□□□ 0.6
NPHP4-209ENST00000489180 PARP9Q8IXQ6 854 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 ZNF668Q96K58 619 aaPredicted RBP18.78■□□□□ 0.6
NPHP4-209ENST00000489180 BARHL2Q9NY43 387 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 KRT38O76015 456 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 PDXDC1Q6P996 788 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 TRIM59Q8IWR1 403 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 MXD3Q9BW11 206 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 TRPV6Q9H1D0 765 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 ETNK1Q9HBU6 452 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 UBE4BO95155 1302 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 DENND3A2RUS2 1198 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 KRT14P02533 472 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 NCAPHQ15003 741 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 SLC13A1Q9BZW2 595 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 LIMA1Q9UHB6 759 aaKnown RBP18.78■□□□□ 0.6
NPHP4-209ENST00000489180 ZBTB24O43167 697 aaPredicted RBP18.78■□□□□ 0.6
NPHP4-209ENST00000489180 CHEK2O96017 543 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 RFX1P22670 979 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 CRKP46108 304 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 FMR1Q06787 632 aaKnown RBP eCLIP18.78■□□□□ 0.62e-17■■■■■ 60.8
NPHP4-209ENST00000489180 STAG2Q8N3U4 1231 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 COG1Q8WTW3 980 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 NBPF3Q9H094 633 aa18.78■□□□□ 0.6
NPHP4-209ENST00000489180 PPP1R12AO14974 1030 aaPredicted RBP18.77■□□□□ 0.6
NPHP4-209ENST00000489180 SCARF1Q14162 830 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 KLHL38Q2WGJ6 581 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 ANGPTL8Q6UXH0 198 aa18.77■□□□□ 0.6
NPHP4-209ENST00000489180 KRT27Q7Z3Y8 459 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms