RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 SCG2P13521 617 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 GNA11P29992 359 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 GHRHRQ02643 423 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 DHX9Q08211 1270 aaKnown RBP9.9□□□□□ -0.82
USP4-213ENST00000488520 SEMA3FQ13275 785 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 BTG3Q14201 252 aaPredicted RBP9.9□□□□□ -0.82
USP4-213ENST00000488520 SAFBQ15424 915 aaKnown RBP eCLIP9.9□□□□□ -0.82
USP4-213ENST00000488520 PFKFB3Q16875 520 aaPredicted RBP9.9□□□□□ -0.82
USP4-213ENST00000488520 SLC35G1Q2M3R5 365 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 GNPTABQ3T906 1256 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 INTS6LQ5JSJ4 861 aaKnown RBP9.9□□□□□ -0.82
USP4-213ENST00000488520 RUFY4Q6ZNE9 571 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 SAMD3Q8N6K7 520 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 CCDC148Q8NFR7 591 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 SMARCC2Q8TAQ2 1214 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 BICD2Q8TD16 824 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 LMBR1Q8WVP7 490 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 APBB2Q92870 758 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 MTMR8Q96EF0 704 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 MFSD14AQ96MC6 490 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 C11orf84Q9BUA3 381 aaPredicted RBP9.9□□□□□ -0.82
USP4-213ENST00000488520 KCNH6Q9H252 994 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 PSTPIP2Q9H939 334 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 BRMS1Q9HCU9 246 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 CD207Q9UJ71 328 aa9.9□□□□□ -0.82
USP4-213ENST00000488520 C5orf67F2Z3F1 127 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 H3BQV1 296 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 ENPP3O14638 875 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 NCK2O43639 380 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 CAND2O75155 1236 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 LARGE1O95461 756 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 FBXO45P0C2W1 286 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 IBSPP21815 317 aaPredicted RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 MARK3P27448 753 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 NDUFV1P49821 464 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 ADAM17P78536 824 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 SMAD4Q13485 552 aaKnown RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 GNL2Q13823 731 aaKnown RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 NEDD9Q14511 834 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 NTRK3Q16288 839 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 PAN2Q504Q3 1202 aaKnown RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 HERC4Q5GLZ8 1057 aaPredicted RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 FAM26DQ5JW98 314 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 PPP1R26Q5T8A7 1209 aaPredicted RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 MCTP2Q6DN12 878 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 METTL7BQ6UX53 244 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 ADGRD2Q7Z7M1 963 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 DNAJB3Q8WWF6 145 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 ZFP42Q96MM3 310 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 POP1Q99575 1024 aaKnown RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 LMAN2LQ9H0V9 348 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 EHMT1Q9H9B1 1298 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 SH3GLB2Q9NR46 395 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 PGPEP1Q9NXJ5 209 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 BARHL2Q9NY43 387 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 ZNF215Q9UL58 517 aaPredicted RBP9.89□□□□□ -0.83
USP4-213ENST00000488520 SPTBN4Q9H254 2564 aa9.89□□□□□ -0.83
USP4-213ENST00000488520 SPDYE3A6NKU9 549 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 SPATA31C2B4DYI2 1134 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 PDCP20941 246 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 DNAJB1P25685 340 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 ICAM3P32942 547 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 ADCY7P51828 1080 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 IGBP1P78318 339 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 ADAM15Q13444 863 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 LPIN1Q14693 890 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 GALNT17Q6IS24 598 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 RBM23Q86U06 439 aaKnown RBP9.88□□□□□ -0.83
USP4-213ENST00000488520 FAM177A1Q8N128 213 aaPredicted RBP9.88□□□□□ -0.83
USP4-213ENST00000488520 MEIOBQ8N635 442 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 NSUN7Q8NE18 718 aaKnown RBP9.88□□□□□ -0.83
USP4-213ENST00000488520 PRSS33Q8NF86 280 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 EDAQ92838 391 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 CLP1Q92989 425 aaKnown RBP9.88□□□□□ -0.83
USP4-213ENST00000488520 PBXIP1Q96AQ6 731 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 ZNF689Q96CS4 500 aaPredicted RBP9.88□□□□□ -0.83
USP4-213ENST00000488520 ZBTB10Q96DT7 871 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 C8orf76Q96K31 380 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 RC3H2Q9HBD1 1191 aaKnown RBP9.88□□□□□ -0.83
USP4-213ENST00000488520 RWDD3Q9Y3V2 267 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 NID2Q14112 1375 aa9.88□□□□□ -0.83
USP4-213ENST00000488520 CNTNAP5Q8WYK1 1306 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 NRCAMQ92823 1304 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 STK36Q9NRP7 1315 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 TMEM221A6NGB7 291 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 M0R296 226 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 FIBPO43427 364 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 DGKIO75912 1065 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 FOSP01100 380 aaPredicted RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 MMP1P03956 469 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 PDIA4P13667 645 aaKnown RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 GJB2P29033 226 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 TCF7P36402 384 aaPredicted RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 MGAT3Q09327 533 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 TMEM62Q0P6H9 643 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 PPFIA1Q13136 1202 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 CAMK1Q14012 370 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 LARP1BQ659C4 914 aaKnown RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 WWC2Q6AWC2 1192 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 USP17L6PQ6QN14 398 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms