RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 RNF149Q8NC42 400 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 DBF4BQ8NFT6 615 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 SEPT8Q92599 483 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 RNPC3Q96LT9 517 aaKnown RBP12.25□□□□□ -0.45
UBE4B-210ENST00000488228 REEP2Q9BRK0 252 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 KIFC3Q9BVG8 833 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 IFT122Q9HBG6 1241 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 FAM13BQ9NYF5 915 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 CXXC1Q9P0U4 656 aaPredicted RBP12.25□□□□□ -0.45
UBE4B-210ENST00000488228 COLQQ9Y215 455 aaPredicted RBP12.25□□□□□ -0.45
UBE4B-210ENST00000488228 LAMA2P24043 3122 aaKnown RBP12.25□□□□□ -0.45
UBE4B-210ENST00000488228 COL4A6Q14031 1691 aa12.25□□□□□ -0.45
UBE4B-210ENST00000488228 FNDC1Q4ZHG4 1894 aaPredicted RBP12.25□□□□□ -0.45
UBE4B-210ENST00000488228 LRRIQ4A6NIV6 560 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 ZBBXA8MT70 800 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 POLR2DO15514 142 aaKnown RBP12.24□□□□□ -0.45
UBE4B-210ENST00000488228 RPS6KA5O75582 802 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 KRT18P05783 430 aaKnown RBP12.24□□□□□ -0.45
UBE4B-210ENST00000488228 DARSP14868 501 aaKnown RBP12.24□□□□□ -0.45
UBE4B-210ENST00000488228 CMA1P23946 247 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 GUCY2CP25092 1073 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 PHKA2P46019 1235 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 ARSHQ5FYA8 562 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 ADGRA3Q8IWK6 1321 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 TDHQ8IZJ6 230 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 KCTD17Q8N5Z5 321 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 LINC01599Q8WXQ3 324 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 MRPS27Q92552 414 aaKnown RBP12.24□□□□□ -0.45
UBE4B-210ENST00000488228 STAMQ92783 540 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 MINDY3Q9H8M7 445 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 ERVK-5Q9HDB9 667 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 KCNH3Q9ULD8 1083 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 PADI3Q9ULW8 664 aa12.24□□□□□ -0.45
UBE4B-210ENST00000488228 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.23□□□□□ -0.45
UBE4B-210ENST00000488228 A0A1W2PQ27 194 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 A0A1W2PQ64 194 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 A0A1W2PQD8 194 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 MYMKA6NI61 221 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 FGBP02675 491 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 ACTN1P12814 892 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 EIF4BP23588 611 aaKnown RBP12.23□□□□□ -0.45
UBE4B-210ENST00000488228 BMP8BP34820 402 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 NDUFA8P51970 172 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 WDR5P61964 334 aaKnown RBP12.23□□□□□ -0.45
UBE4B-210ENST00000488228 DEFB103AP81534 67 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 MBTD1Q05BQ5 628 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 NFX1Q12986 1120 aaKnown RBP12.23□□□□□ -0.45
UBE4B-210ENST00000488228 TFDP1Q14186 410 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 MXD4Q14582 209 aaPredicted RBP12.23□□□□□ -0.45
UBE4B-210ENST00000488228 DYMQ7RTS9 669 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 KIFAP3Q92845 792 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 DRC1Q96MC2 740 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 GCOM2Q9BZD3 368 aaPredicted RBP12.23□□□□□ -0.45
UBE4B-210ENST00000488228 TMX1Q9H3N1 280 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 KCND2Q9NZV8 630 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 ST3GAL5Q9UNP4 418 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 HPSEQ9Y251 543 aa12.23□□□□□ -0.45
UBE4B-210ENST00000488228 COL4A4P53420 1690 aaPredicted RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 SFI1A8K8P3 1242 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 ACTN4O43707 911 aaKnown RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 MGEA5O60502 916 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 GADD45BO75293 160 aaPredicted RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 TBCAO75347 108 aaKnown RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 IBSPP21815 317 aaPredicted RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 SFPQP23246 707 aaKnown RBP eCLIP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 PEX3P56589 373 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 PTENP60484 403 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 RASIP1Q5U651 963 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 CDCA2Q69YH5 1023 aaPredicted RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 FAM109BQ6ICB4 259 aaPredicted RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 SV2BQ7L1I2 683 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 CATSPER4Q7RTX7 472 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 TMCO2Q7Z6W1 182 aaPredicted RBP12.22□□□□□ -0.45
UBE4B-210ENST00000488228 GRAMD1CQ8IYS0 662 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 IQUBQ8NA54 791 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 USP38Q8NB14 1042 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 HERVK_113Q902F9 699 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 APBB2Q92870 758 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 ZHX3Q9H4I2 956 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 SERTAD1Q9UHV2 236 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 SQORQ9Y6N5 450 aa12.22□□□□□ -0.45
UBE4B-210ENST00000488228 TRIP11Q15643 1979 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 TDRD15B5MCY1 1934 aaKnown RBP12.21□□□□□ -0.45
UBE4B-210ENST00000488228 PDCD11Q14690 1871 aaKnown RBP12.21□□□□□ -0.45
UBE4B-210ENST00000488228 RALGAPA2Q2PPJ7 1873 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 FAM237AA0A1B0GTK4 181 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.21□□□□□ -0.45
UBE4B-210ENST00000488228 GOLGA6L4A6NEF3 574 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 CCDC169A6NNP5 214 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 INO80B-WBP1J3KQ70 363 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 ASAP2O43150 1006 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 BAIAP3O94812 1187 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 FAM13AO94988 1023 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 EDN1P05305 212 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 LIG1P18858 919 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 CASP1P29466 404 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 SYKP43405 635 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 NAMPTP43490 491 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 NPTX2P47972 431 aa12.21□□□□□ -0.45
UBE4B-210ENST00000488228 CDC42EP1Q00587 391 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms