RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 NCANO14594 1321 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 F8VZ95 297 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 H3BQF6 201 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 ATP2A1O14983 1001 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 MUM1L1Q5H9M0 696 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 TCERG1LQ5VWI1 586 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 MICALL2Q8IY33 904 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 SCYL3Q8IZE3 742 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 LRRC57Q8N9N7 239 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 REPS2Q8NFH8 660 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 EXOC4Q96A65 974 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 GPRASP2Q96D09 838 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 ITGBL1O95965 494 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-212ENST00000477970 CCDC181Q5TID7 509 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 SLC30A10Q6XR72 485 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 KCNN1Q92952 543 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 PBKQ96KB5 322 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 INPP4AQ96PE3 977 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-212ENST00000477970 PDCD2LQ9BRP1 358 aa13.31□□□□□ -0.28
PTPRF-212ENST00000477970 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-212ENST00000477970 AJAP1Q9UKB5 411 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-212ENST00000477970 VWA5AO00534 786 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 BUB1O43683 1085 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 ALAS1P13196 640 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 PSMC5P62195 406 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 NNTQ13423 1086 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 TCEAL1Q15170 157 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 ZNF746Q6NUN9 644 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 ALKBH5Q6P6C2 394 aaKnown RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 EIF1ADQ8N9N8 165 aaKnown RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 LMBR1Q8WVP7 490 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 GPR88Q9GZN0 384 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 RAVER2Q9HCJ3 691 aaKnown RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 APEX2Q9UBZ4 518 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 ASTN2O75129 1339 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 LRRIQ3A6PVS8 624 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 WDR64B1ANS9 1081 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 ZBTB48P10074 688 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 RPS6P62753 249 aaKnown RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 COG2Q14746 738 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 KIF22Q14807 665 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 LMO3Q8TAP4 145 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 INTS2Q9H0H0 1204 aaKnown RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 RPAP3Q9H6T3 665 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-212ENST00000477970 PDE11AQ9HCR9 933 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 TMEM59LQ9UK28 342 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 PAPPA2Q9BXP8 1791 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 A0A0G2JMZ2 1700 aa13.3□□□□□ -0.28
PTPRF-212ENST00000477970 K7ENM7 598 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 STAM2O75886 525 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 YWHABP31946 246 aaKnown RBP13.29□□□□□ -0.28
PTPRF-212ENST00000477970 BACE1P56817 501 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 MYL7Q01449 175 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 RNF207Q6ZRF8 634 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 ANKRD13CQ8N6S4 541 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 TAAR1Q96RJ0 339 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 PACSIN1Q9BY11 444 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 C17orf75Q9HAS0 396 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 HPCAL4Q9UM19 191 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 NFASCO94856 1347 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 MYPNQ86TC9 1320 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 SYCE1Q8N0S2 351 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.29□□□□□ -0.28
PTPRF-212ENST00000477970 CAVIN3Q969G5 261 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 TRERF1Q96PN7 1200 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 STIM2Q9P246 746 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 STXBP5LQ9Y2K9 1186 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 PPP2R3BQ9Y5P8 575 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 SIP14410 1827 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 C19orf81C9J6K1 198 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 DDX3XO00571 662 aaKnown RBP eCLIP13.29□□□□□ -0.28
PTPRF-212ENST00000477970 NCK2O43639 380 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 DKC1O60832 514 aaKnown RBP eCLIP13.29□□□□□ -0.28
PTPRF-212ENST00000477970 POTEJP0CG39 1038 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 HIRAP54198 1017 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-212ENST00000477970 MTMR2Q13614 643 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 CBWD6Q4V339 395 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 CBWD3Q5JTY5 395 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 CBWD5Q5RIA9 395 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 EMBQ6PCB8 327 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 ACTRT1Q8TDG2 376 aa13.29□□□□□ -0.28
PTPRF-212ENST00000477970 H2AFZP0C0S5 128 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 TMEM253P0C7T8 217 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 KRT13P13646 458 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 CCND2P30279 289 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 ABCD1P33897 745 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 HADHBP55084 474 aaKnown RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 ARID5AQ03989 594 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SPP2Q13103 211 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 H2AFVQ71UI9 128 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 ZNF771Q7L3S4 317 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 APOBEC3FQ8IUX4 373 aaKnown RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 TPCN2Q8NHX9 752 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 TRPM4Q8TD43 1214 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 LRRC1Q9BTT6 524 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SUGCTQ9HAC7 445 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 GDF3Q9NR23 364 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 SUCLA2Q9P2R7 463 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-212ENST00000477970 DNAJC12Q9UKB3 198 aa13.28□□□□□ -0.28
PTPRF-212ENST00000477970 EVI5O60447 810 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms