RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 YWHABP31946 246 aaKnown RBP15.79■□□□□ 0.12
UPF3A-204ENST00000475218 ZNF410Q86VK4 478 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 TMEM143Q96AN5 459 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 SCLT1Q96NL6 688 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 EIF2AK1Q9BQI3 630 aaKnown RBP15.79■□□□□ 0.12
UPF3A-204ENST00000475218 MINDY3Q9H8M7 445 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 BRMS1Q9HCU9 246 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 XPNPEP1Q9NQW7 623 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 BMP2KQ9NSY1 1161 aaPredicted RBP15.79■□□□□ 0.12
UPF3A-204ENST00000475218 CLDND1Q9NY35 253 aa15.79■□□□□ 0.12
UPF3A-204ENST00000475218 MEIS3P2A8K0S8 358 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 PBX3P40426 434 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 CALCRLQ16602 461 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 FAM178BQ8IXR5 827 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 PRPF31Q8WWY3 499 aaKnown RBP15.78■□□□□ 0.12
UPF3A-204ENST00000475218 NLRP4Q96MN2 994 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 TRAIPQ9BWF2 469 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 TTC12Q9H892 705 aaPredicted RBP15.78■□□□□ 0.12
UPF3A-204ENST00000475218 PCDHA12Q9UN75 941 aa15.78■□□□□ 0.12
UPF3A-204ENST00000475218 NEMFO60524 1076 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 FGF18O76093 207 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 LYPLA2O95372 231 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 GLP2RO95838 553 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 ZSCAN20P17040 1043 aaPredicted RBP15.77■□□□□ 0.12
UPF3A-204ENST00000475218 RBM25P49756 843 aaKnown RBP15.77■□□□□ 0.12
UPF3A-204ENST00000475218 DNM2P50570 870 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 ERVFC1P60507 584 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 ADAM15Q13444 863 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 LLPHQ9BRT6 129 aaKnown RBP15.77■□□□□ 0.12
UPF3A-204ENST00000475218 ZSWIM4Q9H7M6 989 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 COL4A3BPQ9Y5P4 624 aa15.77■□□□□ 0.12
UPF3A-204ENST00000475218 A0A087WWV3 80 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 RFC5P40937 340 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 PHKA2P46019 1235 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 CDC42EP1Q00587 391 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 EMC2Q15006 297 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 TPH2Q8IWU9 490 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 RNF169Q8NCN4 708 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 HELQQ8TDG4 1101 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 SLC7A3Q8WY07 619 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 IGFLR1Q9H665 355 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 EPHX3Q9H6B9 360 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 CHST12Q9NRB3 414 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 RNF216Q9NWF9 866 aaPredicted RBP15.77■□□□□ 0.11
UPF3A-204ENST00000475218 CLEC1BQ9P126 229 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 PPME1Q9Y570 386 aa15.77■□□□□ 0.11
UPF3A-204ENST00000475218 POTEMA6NI47 508 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 FSCN2O14926 492 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 MARCH6O60337 910 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 DKC1O60832 514 aaKnown RBP eCLIP15.76■□□□□ 0.11
UPF3A-204ENST00000475218 BAG4O95429 457 aaKnown RBP15.76■□□□□ 0.11
UPF3A-204ENST00000475218 EOMESO95936 686 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 TXKP42681 527 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 POLGP54098 1239 aaPredicted RBP15.76■□□□□ 0.11
UPF3A-204ENST00000475218 RBM10P98175 930 aaKnown RBP15.76■□□□□ 0.11
UPF3A-204ENST00000475218 LAMTOR4Q0VGL1 99 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 TRIM29Q14134 588 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 XKR9Q5GH70 373 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 EP400NLQ6ZTU2 488 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 FBXO18Q8NFZ0 1043 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 VN1R2Q8NFZ6 395 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 LPPQ93052 612 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 MSLNLQ96KJ4 702 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 JPH2Q9BR39 696 aaPredicted RBP15.76■□□□□ 0.11
UPF3A-204ENST00000475218 AGPAT5Q9NUQ2 364 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 PCDHB12Q9Y5F1 795 aa15.76■□□□□ 0.11
UPF3A-204ENST00000475218 SPATA31C1P0DKV0 1188 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 LAG3P18627 525 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 SFPQP23246 707 aaKnown RBP eCLIP15.75■□□□□ 0.11
UPF3A-204ENST00000475218 HOXA11P31270 313 aaPredicted RBP15.75■□□□□ 0.11
UPF3A-204ENST00000475218 UBE3AQ05086 875 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 CLUL1Q15846 466 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 SPOUT1Q5T280 376 aaKnown RBP15.75■□□□□ 0.11
UPF3A-204ENST00000475218 KCNT2Q6UVM3 1135 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 FERMT3Q86UX7 667 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 PSPC1Q8WXF1 523 aaKnown RBP15.75■□□□□ 0.11
UPF3A-204ENST00000475218 C8orf76Q96K31 380 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 DACT1Q9NYF0 836 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 PIN4Q9Y237 131 aaKnown RBP15.75■□□□□ 0.11
UPF3A-204ENST00000475218 HOXA2O43364 376 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 NCK2O43639 380 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 B4GALT3O60512 393 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 SRGAP2CP0DJJ0 459 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 ATP2B1P20020 1258 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 MCM7P33993 719 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 NRIP1P48552 1158 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 PLCB3Q01970 1234 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 LONRF3Q496Y0 759 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 UBXN11Q5T124 520 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 RBM23Q86U06 439 aaKnown RBP15.75■□□□□ 0.11
UPF3A-204ENST00000475218 THNSL1Q8IYQ7 743 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 LRRC43Q8N309 656 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 EFHBQ8N7U6 833 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 TLR9Q9NR96 1032 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 AAASQ9NRG9 546 aa15.75■□□□□ 0.11
UPF3A-204ENST00000475218 PER2O15055 1255 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 MBTPS2O43462 519 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 ZNF623O75123 536 aa15.74■□□□□ 0.11
UPF3A-204ENST00000475218 CD2BP2O95400 341 aaKnown RBP15.74■□□□□ 0.11
UPF3A-204ENST00000475218 RARRES1P49788 294 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms