RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LRRC43Q8N309 656 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 ZNF579Q8NAF0 562 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 RNF169Q8NCN4 708 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 WASF1Q92558 559 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 FDXACB1Q9BRP7 624 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 GCOM2Q9BZD3 368 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 CYP26B1Q9NR63 512 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 SUCLA2Q9P2R7 463 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 CD207Q9UJ71 328 aa21.08■□□□□ 0.97
CCDC88B-206ENST00000473405 MUC6Q6W4X9 2439 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 FSCN2O14926 492 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 KRT2P35908 639 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 PBX3P40426 434 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 NDUFV1P49821 464 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 NPEPPSP55786 919 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 ERVFC1P60507 584 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 CDC42EP1Q00587 391 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 RBM23Q86U06 439 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 ZNF410Q86VK4 478 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 RHPN2Q8IUC4 686 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 KSR1Q8IVT5 923 aa21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 NSUN7Q8NE18 718 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-206ENST00000473405 FAM86C2PA6NEL3 165 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 GPR37L1O60883 481 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 EYA4O95677 639 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 P4HBP07237 508 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 TMEM31Q5JXX7 168 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 SMRP1Q8NCR6 262 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 HELQQ8TDG4 1101 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 NAP1L4Q99733 375 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 LXNQ9BS40 222 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 DACT1Q9NYF0 836 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 BARX2Q9UMQ3 279 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 LZTS1Q9Y250 596 aa21.06■□□□□ 0.96
CCDC88B-206ENST00000473405 JAK2O60674 1132 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 SEC24BO95487 1268 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 EOMESO95936 686 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 SFPQP23246 707 aaKnown RBP eCLIP21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 RBM10P98175 930 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 PLCB3Q01970 1234 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 ST3GAL1Q11201 340 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 COASYQ13057 564 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 KCNT2Q6UVM3 1135 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 ABI1Q8IZP0 508 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 VN1R2Q8NFZ6 395 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 NLRP4Q96MN2 994 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 JPH2Q9BR39 696 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 TRAIPQ9BWF2 469 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 DHX33Q9H6R0 707 aaKnown RBP21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 TLE6Q9H808 572 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 IFT122Q9HBG6 1241 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 CHST12Q9NRB3 414 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 RGL1Q9NZL6 768 aa21.05■□□□□ 0.96
CCDC88B-206ENST00000473405 WNT7AO00755 349 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 PER2O15055 1255 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 PHKA2P46019 1235 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 NEK4P51957 841 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 EPHA7Q15375 998 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 NCAPH2Q6IBW4 605 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 C4orf19Q8IY42 314 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 MICAL1Q8TDZ2 1067 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 SLC7A3Q8WY07 619 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 MRPS27Q92552 414 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 CEP170P1Q96L14 293 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 ZNF558Q96NG5 402 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 PIN4Q9Y237 131 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 COL4A3BPQ9Y5P4 624 aa21.04■□□□□ 0.96
CCDC88B-206ENST00000473405 DKC1O60832 514 aaKnown RBP eCLIP21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 YWHABP31946 246 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 PPM1AP35813 382 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 DUSP6Q16828 381 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 PLPP4Q5VZY2 271 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 PDE12Q6L8Q7 609 aaKnown RBP21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 SLFN12Q8IYM2 578 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 DYDC2Q96IM9 177 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 BRMS1Q9HCU9 246 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 PPME1Q9Y570 386 aa21.03■□□□□ 0.96
CCDC88B-206ENST00000473405 MEIS3P2A8K0S8 358 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 BTBD18B2RXH4 712 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 ZBTB39O15060 712 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 RFC5P40937 340 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 FOSBP53539 338 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 POLGP54098 1239 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 CYP4A11Q02928 519 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 KCNC3Q14003 757 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 TWF2Q6IBS0 349 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 SLC39A11Q8N1S5 342 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 PRPF31Q8WWY3 499 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 LPPQ93052 612 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 TMEM143Q96AN5 459 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 POP1Q99575 1024 aaKnown RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 CDCA3Q99618 268 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 TCF25Q9BQ70 676 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 INO80BQ9C086 356 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 MINDY3Q9H8M7 445 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 BMP2KQ9NSY1 1161 aaPredicted RBP21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 AGPAT5Q9NUQ2 364 aa21.02■□□□□ 0.96
CCDC88B-206ENST00000473405 HIDE1A8MVS5 230 aa21.01■□□□□ 0.95
CCDC88B-206ENST00000473405 DCXO43602 365 aa21.01■□□□□ 0.95
CCDC88B-206ENST00000473405 ALADP13716 330 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms