RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 LGALS16A8MUM7 142 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 MAGEB2O15479 319 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 NR3C1P04150 777 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 AKR1A1P14550 325 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 HOXD13P35453 343 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 NPTX2P47972 431 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 CPT1AP50416 773 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 TRIM14Q14142 442 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 MXD4Q14582 209 aaPredicted RBP14.09□□□□□ -0.15
VPS13D-205ENST00000473099 CCL14Q16627 93 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 CCDC40Q4G0X9 1142 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 FRMD5Q7Z6J6 570 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 C12orf56Q8IXR9 622 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 RETREG2Q8NC44 543 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 IQCDQ96DY2 449 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 AP5M1Q9H0R1 490 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 GPRC5CQ9NQ84 441 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 TAB2Q9NYJ8 693 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 GNEQ9Y223 722 aaKnown RBP14.09□□□□□ -0.15
VPS13D-205ENST00000473099 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS13D-205ENST00000473099 SCN10AQ9Y5Y9 1956 aa14.09□□□□□ -0.15
VPS13D-205ENST00000473099 IGKV6-21A0A0C4DH24 114 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 H3BRB1 525 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 SLC16A4O15374 487 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 ASAP2O43150 1006 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 TPM1P09493 284 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 EPB41P11171 864 aaKnown RBP14.08□□□□□ -0.16
VPS13D-205ENST00000473099 MARK3P27448 753 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 CTGFP29279 349 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 CYP2C19P33261 490 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 ARL2P36404 184 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 FLT3LGP49771 235 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 ZC2HC1CQ53FD0 456 aaPredicted RBP14.08□□□□□ -0.16
VPS13D-205ENST00000473099 FKBP15Q5T1M5 1219 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 GJC2Q5T442 439 aaPredicted RBP14.08□□□□□ -0.16
VPS13D-205ENST00000473099 CCDC186Q7Z3E2 898 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 TLK2Q86UE8 772 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 TRIM50Q86XT4 487 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 CREBRFQ8IUR6 639 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 MAP4K3Q8IVH8 894 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 TMEM161BQ8NDZ6 487 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 NOC4LQ9BVI4 516 aaKnown RBP14.08□□□□□ -0.16
VPS13D-205ENST00000473099 VPS16Q9H269 839 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 TUT1Q9H6E5 874 aaKnown RBP14.08□□□□□ -0.16
VPS13D-205ENST00000473099 POLD4Q9HCU8 107 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 INTS13Q9NVM9 706 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 RNF186Q9NXI6 227 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 SAGE1Q9NXZ1 904 aa14.08□□□□□ -0.16
VPS13D-205ENST00000473099 MAPK13O15264 365 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 TGFB1I1O43294 461 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 KPNA6O60684 536 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 DUSP11O75319 330 aaKnown RBP14.07□□□□□ -0.16
VPS13D-205ENST00000473099 TBC1D8O95759 1140 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 PSMC2P35998 433 aaKnown RBP14.07□□□□□ -0.16
VPS13D-205ENST00000473099 PBX1P40424 430 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 UBXN1Q04323 297 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 TMEM63BQ5T3F8 832 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 PSPC1Q8WXF1 523 aaKnown RBP14.07□□□□□ -0.16
VPS13D-205ENST00000473099 ERO1AQ96HE7 468 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 C16orf70Q9BSU1 422 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 KATNAL1Q9BW62 490 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 AGPAT3Q9NRZ7 376 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 ARHGAP28Q9P2N2 729 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 ARMCX3Q9UH62 379 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-205ENST00000473099 TBX20Q9UMR3 447 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 FRMD4BQ9Y2L6 1034 aa14.07□□□□□ -0.16
VPS13D-205ENST00000473099 DENND3A2RUS2 1198 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 RRN3P2A6NIE6 340 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 ZBTB42B2RXF5 422 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 PES1O00541 588 aaKnown RBP14.06□□□□□ -0.16
VPS13D-205ENST00000473099 KIAA0391O15091 583 aaKnown RBP14.06□□□□□ -0.16
VPS13D-205ENST00000473099 DYNC1LI2O43237 492 aaPredicted RBP14.06□□□□□ -0.16
VPS13D-205ENST00000473099 TRPA1O75762 1119 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 ECM2O94769 699 aaPredicted RBP14.06□□□□□ -0.16
VPS13D-205ENST00000473099 CYBAP13498 195 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 TMOD1P28289 359 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 EFNA5P52803 228 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 PRMT2P55345 433 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 STRN3Q13033 797 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 TFDP1Q14186 410 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 VWA3BQ502W6 1294 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 PRAMEF19Q5SWL8 479 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 ZSCAN30Q86W11 494 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 PPFIBP1Q86W92 1011 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 TRIM59Q8IWR1 403 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 DEPTORQ8TB45 409 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 BSNDQ8WZ55 320 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 ERGIC2Q96RQ1 377 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 NUP58Q9BVL2 599 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 C2orf40Q9H1Z8 148 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 NDST4Q9H3R1 872 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 TMEM134Q9H6X4 195 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 SPC25Q9HBM1 224 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 DMAC2Q9NW81 257 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 CITO14578 2027 aa14.06□□□□□ -0.16
VPS13D-205ENST00000473099 LRRIQ4A6NIV6 560 aa14.05□□□□□ -0.16
VPS13D-205ENST00000473099 TEX33O43247 280 aa14.05□□□□□ -0.16
VPS13D-205ENST00000473099 F2P00734 622 aa14.05□□□□□ -0.16
VPS13D-205ENST00000473099 INSRRP14616 1297 aa14.05□□□□□ -0.16
VPS13D-205ENST00000473099 SFPQP23246 707 aaKnown RBP eCLIP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms