RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 WRAP73Q9P2S5 460 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 CD207Q9UJ71 328 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 PCDHGC5Q9Y5F6 944 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 C5orf42Q9H799 3197 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 A0A087WZ62 844 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 IGKV6-21A0A0C4DH24 114 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 MAFO75444 373 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 NDUFV1P49821 464 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 FAM189BP81408 668 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 GUCY1B3Q02153 619 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 EPHA7Q15375 998 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 CALCRLQ16602 461 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 SLFN12Q8IYM2 578 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 RNF169Q8NCN4 708 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 POF1BQ8WVV4 589 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 DYDC2Q96IM9 177 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 CEP170P1Q96L14 293 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 NLRP4Q96MN2 994 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 JPH2Q9BR39 696 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 FDXACB1Q9BRP7 624 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 ELAC1Q9H777 363 aaKnown RBP17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 BMP2KQ9NSY1 1161 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 RGL1Q9NZL6 768 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 CLEC1BQ9P126 229 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 MUTYHQ9UIF7 546 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 LIMCH1Q9UPQ0 1083 aa17.6■□□□□ 0.41
CCDC88B-205ENST00000472524 WNT7AO00755 349 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 POLGP54098 1239 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 CYP4A11Q02928 519 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 CTTNQ14247 550 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 C8orf34Q49A92 452 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 ECHDC2Q86YB7 292 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 KSR1Q8IVT5 923 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 ZNF579Q8NAF0 562 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 MSLNLQ96KJ4 702 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 AAASQ9NRG9 546 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 TYW1Q9NV66 732 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 PCDHB12Q9Y5F1 795 aa17.59■□□□□ 0.41
CCDC88B-205ENST00000472524 NEMFO60524 1076 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 YWHABP31946 246 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 NRIP1P48552 1158 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 CDC42EP1Q00587 391 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 SPIRE1Q08AE8 756 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 RBM23Q86U06 439 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 ZNF410Q86VK4 478 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 RNF135Q8IUD6 432 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 C4orf19Q8IY42 314 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 ABI1Q8IZP0 508 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 EFHBQ8N7U6 833 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 COLGALT1Q8NBJ5 622 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 SLC7A3Q8WY07 619 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 POP1Q99575 1024 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 TMEM117Q9H0C3 514 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 RNF19AQ9NV58 838 aa17.58■□□□□ 0.4
CCDC88B-205ENST00000472524 HOXA2O43364 376 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 EYA4O95677 639 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 GLP2RO95838 553 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 ATP2B1P20020 1258 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 SFPQP23246 707 aaKnown RBP eCLIP17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 SAFBQ15424 915 aaKnown RBP eCLIP17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 XKR9Q5GH70 373 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 HFE2Q6ZVN8 426 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 OTUD6AQ7L8S5 288 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 TPH2Q8IWU9 490 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 THNSL1Q8IYQ7 743 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 PPP2R3CQ969Q6 453 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 TMEM143Q96AN5 459 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 C8orf76Q96K31 380 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 CASD1Q96PB1 797 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 EIF2AK1Q9BQI3 630 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 CWH43Q9H720 699 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 ZSWIM4Q9H7M6 989 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 DACT1Q9NYF0 836 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 BARX2Q9UMQ3 279 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 PCDHA12Q9UN75 941 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 COL4A3BPQ9Y5P4 624 aa17.57■□□□□ 0.4
CCDC88B-205ENST00000472524 ZBTB39O15060 712 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 FGF18O76093 207 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 LAG3P18627 525 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 RFC5P40937 340 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 TXKP42681 527 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 RBM10P98175 930 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 HERC4Q5GLZ8 1057 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 CATSPER4Q7RTX7 472 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 LRRC43Q8N309 656 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 SMRP1Q8NCR6 262 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 PSPC1Q8WXF1 523 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 KIF2CQ99661 725 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 INO80BQ9C086 356 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 DHX33Q9H6R0 707 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 TTC12Q9H892 705 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 PIN4Q9Y237 131 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 PPME1Q9Y570 386 aa17.56■□□□□ 0.4
CCDC88B-205ENST00000472524 A0A0U1RQF3 1178 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 PER2O15055 1255 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 SLITRK3O94933 977 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 ATF7P17544 494 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 MCM7P33993 719 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 COASYQ13057 564 aa17.55■□□□□ 0.4
CCDC88B-205ENST00000472524 EMC2Q15006 297 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms