RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PHF19Q5T6S3 580 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 STYK1Q6J9G0 422 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 LBX2Q6XYB7 198 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 ZSWIM2Q8NEG5 633 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 DCAF4Q8WV16 495 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 CDC6Q99741 560 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 YIPF4Q9BSR8 244 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 PRO3102Q9H379 93 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 TAF1DQ9H5J8 278 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-210ENST00000471439 MTMR10Q9NXD2 777 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 STK26Q9P289 416 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 MRPS23Q9Y3D9 190 aaKnown RBP5.62□□□□□ -1.51
VPS13A-210ENST00000471439 TELO2Q9Y4R8 837 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 CEP162Q5TB80 1403 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 SLIT3O75094 1523 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 ZDBF2Q9HCK1 2354 aa5.62□□□□□ -1.51
VPS13A-210ENST00000471439 TRBV23-1A0A0A0MS06 115 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 NCANO14594 1321 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 ABCC6O95255 1503 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 LRG1P02750 347 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 PKN2Q16513 984 aaKnown RBP5.61□□□□□ -1.51
VPS13A-210ENST00000471439 TEPPQ6URK8 271 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 TMC5Q6UXY8 1006 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 FERMT3Q86UX7 667 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 ZNF761Q86XN6 746 aaPredicted RBP5.61□□□□□ -1.51
VPS13A-210ENST00000471439 HOMER1Q86YM7 354 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 APPBP2Q92624 585 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 IPPKQ9H8X2 491 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 ASH2LQ9UBL3 628 aa5.61□□□□□ -1.51
VPS13A-210ENST00000471439 B8ZZF3 427 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 FOXD2O60548 495 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-210ENST00000471439 SOD2P04179 222 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 EN2P19622 333 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-210ENST00000471439 HSD3B2P26439 372 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 GPR85P60893 370 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 LONRF2Q1L5Z9 754 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 PLEKHG4Q58EX7 1191 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 PRR31Q5SQ13 230 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 CST9Q5W186 159 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 OTOP3Q7RTS5 596 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 ZC3H18Q86VM9 953 aaKnown RBP5.6□□□□□ -1.51
VPS13A-210ENST00000471439 KYQ8NBH2 561 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 ADAMTS17Q8TE56 1095 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 CLEC4DQ8WXI8 215 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 RELTQ969Z4 430 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 DHRS4Q9BTZ2 278 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 SLC6A20Q9NP91 592 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 NTMQ9P121 344 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 ZFHX4Q86UP3 3567 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 PPLO60437 1756 aa5.6□□□□□ -1.51
VPS13A-210ENST00000471439 ANKRD11Q6UB99 2663 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 EPG5Q9HCE0 2579 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 TCRBV5S4A2TA0A5A2 114 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 NOBOXO60393 691 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 SARSP49591 514 aaKnown RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 KIZQ2M2Z5 673 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 SKOR2Q2VWA4 1001 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 RSPO2Q6UXX9 243 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 C16orf86Q6ZW13 317 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 KIAA0907Q7Z7F0 614 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 PROSER1Q86XN7 944 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 DDX1Q92499 740 aaKnown RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 TOE1Q96GM8 510 aaKnown RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 CLUHP3Q96NS8 147 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 CD244Q9BZW8 370 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 NCOA5Q9HCD5 579 aaKnown RBP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 SAGE1Q9NXZ1 904 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.59□□□□□ -1.51
VPS13A-210ENST00000471439 RGPD5Q99666 1765 aa5.59□□□□□ -1.51
VPS13A-210ENST00000471439 SPTBN4Q9H254 2564 aa5.59□□□□□ -1.52
VPS13A-210ENST00000471439 SBNO2Q9Y2G9 1366 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 WDR17Q8IZU2 1322 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 PRRG2O14669 202 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 KRT37O76014 449 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 GNAT1P11488 350 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 RPL13P26373 211 aaKnown RBP5.58□□□□□ -1.52
VPS13A-210ENST00000471439 SUMO1P63165 101 aaKnown RBP5.58□□□□□ -1.52
VPS13A-210ENST00000471439 NKX3-2P78367 333 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 TUSC3Q13454 348 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 KCTD2Q14681 263 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 MCTP2Q6DN12 878 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 FBXO46Q6PJ61 603 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-210ENST00000471439 FRMD5Q7Z6J6 570 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 SCUBE1Q8IWY4 988 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 IFNL3Q8IZI9 196 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS13A-210ENST00000471439 SH3RF2Q8TEC5 729 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 BDH2Q9BUT1 245 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 SMOC1Q9H4F8 434 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 USP40Q9NVE5 1235 aa5.58□□□□□ -1.52
VPS13A-210ENST00000471439 KMT2BQ9UMN6 2715 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-210ENST00000471439 C4BP0C0L5 1744 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 DDX3XO00571 662 aaKnown RBP eCLIP5.57□□□□□ -1.52
VPS13A-210ENST00000471439 CNR2P34972 360 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 MRE11P49959 708 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 MLLT6P55198 1093 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-210ENST00000471439 KRTAP10-2P60368 255 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 TTLL7Q6ZT98 887 aa5.57□□□□□ -1.52
VPS13A-210ENST00000471439 UHMK1Q8TAS1 419 aaKnown RBP5.57□□□□□ -1.52
VPS13A-210ENST00000471439 SLC7A14Q8TBB6 771 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms