RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CEP126Q9P2H0 1117 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 EPS15L1Q9UBC2 864 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 DENND4AQ7Z401 1863 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 TLN2Q9Y4G6 2542 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 RRP8O43159 456 aaKnown RBP6.16□□□□□ -1.42
HMGB1-207ENST00000468384 CAVIN2O95810 425 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 CSF1RP07333 972 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 RASA1P20936 1047 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 PRDX5P30044 214 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 GBP2P32456 591 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-207ENST00000468384 ZEB1P37275 1124 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-207ENST00000468384 CXCL12P48061 93 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 PDE4BQ07343 736 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 PTPRNQ16849 979 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 LETM2Q2VYF4 491 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 TMC5Q6UXY8 1006 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 DNAJC14Q6Y2X3 702 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-207ENST00000468384 TRIM22Q8IYM9 498 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 PHTF2Q8N3S3 785 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 PNPLA1Q8N8W4 532 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 SPATA3Q8NHX4 192 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 ACER1Q8TDN7 264 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 TTC9Q92623 222 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 FGD4Q96M96 766 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 TCP11L1Q9NUJ3 509 aa6.16□□□□□ -1.42
HMGB1-207ENST00000468384 MUC22E2RYF6 1773 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-207ENST00000468384 MYH3P11055 1940 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 MCM3APO60318 1980 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 RBM47A0AV96 593 aaKnown RBP6.15□□□□□ -1.42
HMGB1-207ENST00000468384 UPK3BL1B0FP48 263 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 UPK3BL2E5RIL1 263 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 SUV39H1O43463 412 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 DGKIO75912 1065 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 GH2P01242 217 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 ARID4AP29374 1257 aaPredicted RBP6.15□□□□□ -1.42
HMGB1-207ENST00000468384 CTHP32929 405 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 SCNN1AP37088 669 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 SERPINB4P48594 390 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 CHMP4BP1P59074 171 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 KRTAP1-1Q07627 177 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 APOBRQ0VD83 1088 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 KCNH2Q12809 1159 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 SLFNL1Q499Z3 407 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 IQSEC1Q6DN90 963 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 FOXR1Q6PIV2 292 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 GPR149Q86SP6 731 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 PLPP7Q8NBV4 271 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 WDR66Q8TBY9 1149 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 FAM200AQ8TCP9 573 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 WNT8BQ93098 351 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 MDFIQ99750 246 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 IER2Q9BTL4 223 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 DNAJC18Q9H819 358 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 MKNK2Q9HBH9 465 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 DZANK1Q9NVP4 752 aa6.15□□□□□ -1.42
HMGB1-207ENST00000468384 GOLGA4Q13439 2230 aaKnown RBP6.15□□□□□ -1.43
HMGB1-207ENST00000468384 PLXNA4Q9HCM2 1894 aa6.15□□□□□ -1.43
HMGB1-207ENST00000468384 SOWAHDA6NJG2 315 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 LDHBP07195 334 aaKnown RBP6.14□□□□□ -1.43
HMGB1-207ENST00000468384 FSHRP23945 695 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 COPB2P35606 906 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 STAT3P40763 770 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 CPT1AP50416 773 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 NFKB2Q00653 900 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 TLE3Q04726 772 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 SEMA3BQ13214 749 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 CAVIN4Q5BKX8 364 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 RASGRP2Q7LDG7 609 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 ANKMY2Q8IV38 441 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 CMTR2Q8IYT2 770 aaKnown RBP6.14□□□□□ -1.43
HMGB1-207ENST00000468384 GAB3Q8WWW8 586 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 TCF25Q9BQ70 676 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 POLMQ9NP87 494 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-207ENST00000468384 ENTPD7Q9NQZ7 604 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 PDGFCQ9NRA1 345 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 TMEM260Q9NX78 707 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 NOP53Q9NZM5 478 aaKnown RBP6.14□□□□□ -1.43
HMGB1-207ENST00000468384 PI4KBQ9UBF8 816 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 TSPYL4Q9UJ04 414 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 PCDHB9Q9Y5E1 797 aa6.14□□□□□ -1.43
HMGB1-207ENST00000468384 F5P12259 2224 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 CSMD2Q7Z408 3487 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 RSPH10B2B2RC85 870 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 ANHXE9PGG2 379 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 K7ESF4 209 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 KHNYNO15037 678 aaKnown RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 TLX3O43711 291 aaPredicted RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 CLASP2O75122 1294 aaKnown RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 RPP40O75818 363 aaKnown RBP6.13□□□□□ -1.43
HMGB1-207ENST00000468384 FLOT1O75955 427 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 FGF18O76093 207 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 NEFMP07197 916 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 FTH1P19P0C7X4 201 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 RSPH10BP0C881 870 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 DCTP40126 519 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 CREB5Q02930 508 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 TLE1Q04724 770 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 PTK2Q05397 1052 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 DPYDQ12882 1025 aa6.13□□□□□ -1.43
HMGB1-207ENST00000468384 HTR4Q13639 388 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms