RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 AUTS2Q8WXX7 1259 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 FOXQ1Q9C009 403 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 SMARCAD1Q9H4L7 1026 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 SFXN1Q9H9B4 322 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 PARD6AQ9NPB6 346 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 JADE2Q9NQC1 790 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 ARHGEF3Q9NR81 526 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 TMEM161AQ9NX61 479 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 ANGPTL2Q9UKU9 493 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 KDM3AQ9Y4C1 1321 aa11.09□□□□□ -0.63
USP39-212ENST00000465514 NBEAQ8NFP9 2946 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 MAFGO15525 162 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 CXCL14O95715 111 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 SRFP11831 508 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 INSRRP14616 1297 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 CD44P16070 742 aaKnown RBP11.08□□□□□ -0.64
USP39-212ENST00000465514 LETM2Q2VYF4 491 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 ZNF528Q3MIS6 628 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 SGMS1Q86VZ5 419 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 MICU3Q86XE3 530 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 SLC39A11Q8N1S5 342 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 TMEM87AQ8NBN3 555 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 SLC22A17Q8WUG5 538 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 TRAPPC12Q8WVT3 735 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 ATRIPQ8WXE1 791 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 CASD1Q96PB1 797 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 PCYT2Q99447 389 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 TMEM117Q9H0C3 514 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 EPC1Q9H2F5 836 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 ANO2Q9NQ90 1003 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 GINS2Q9Y248 185 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 NOC2LQ9Y3T9 749 aaKnown RBP11.08□□□□□ -0.64
USP39-212ENST00000465514 PCDHGA2Q9Y5H1 932 aa11.08□□□□□ -0.64
USP39-212ENST00000465514 RRN3P2A6NIE6 340 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 RPS6KA5O75582 802 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 NONOQ15233 471 aaKnown RBP eCLIP11.07□□□□□ -0.64
USP39-212ENST00000465514 WWC2Q6AWC2 1192 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 SYNE3Q6ZMZ3 975 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 SLC44A3Q8N4M1 653 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 TMEM40Q8WWA1 233 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 MXRA8Q9BRK3 442 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 AZI2Q9H6S1 392 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 JPH1Q9HDC5 661 aaPredicted RBP11.07□□□□□ -0.64
USP39-212ENST00000465514 KCNH7Q9NS40 1196 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 RNF19AQ9NV58 838 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 SPATA6Q9NWH7 488 aaPredicted RBP11.07□□□□□ -0.64
USP39-212ENST00000465514 SLC9A2Q9UBY0 812 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 FBXO4Q9UKT5 387 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 PCDHA2Q9Y5H9 948 aa11.07□□□□□ -0.64
USP39-212ENST00000465514 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.07□□□□□ -0.64
USP39-212ENST00000465514 FLNBO75369 2602 aaKnown RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 SLC30A4O14863 429 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 LAMTOR5O43504 91 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 GBP2P32456 591 aaPredicted RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 METAP2P50579 478 aaKnown RBP eCLIP11.06□□□□□ -0.642e-7■■■□□ 16.1
USP39-212ENST00000465514 CLCN6P51797 869 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 NAPAP54920 295 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 ACTR2P61160 394 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 CSTF1Q05048 431 aaKnown RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 BMS1Q14692 1282 aaKnown RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 PLCB4Q15147 1175 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 TYW1BQ6NUM6 668 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 DCLRE1AQ6PJP8 1040 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 APOA5Q6Q788 366 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 ABI1Q8IZP0 508 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 VPS52Q8N1B4 723 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 NETO1Q8TDF5 533 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 BORCS6Q96GS4 357 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 PGBD1Q96JS3 809 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 SDF4Q9BRK5 362 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 ZBP1Q9H171 429 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 ELAC1Q9H777 363 aaKnown RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 CDHR5Q9HBB8 845 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 RIC8AQ9NPQ8 531 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 ST3GAL5Q9UNP4 418 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 MYH9P35579 1960 aaKnown RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 CNTNAP5Q8WYK1 1306 aa11.06□□□□□ -0.64
USP39-212ENST00000465514 DSPP15924 2871 aaKnown RBP11.06□□□□□ -0.64
USP39-212ENST00000465514 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.05□□□□□ -0.64
USP39-212ENST00000465514 SMIM35A0A1B0GVV1 85 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 NT5C1B-RDH14C9J2C7 533 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 HOXA2O43364 376 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 STAT5BP51692 787 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 ADCY7P51828 1080 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 FAM189BP81408 668 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 EXOSC10Q01780 885 aaKnown RBP11.05□□□□□ -0.64
USP39-212ENST00000465514 SPEM2Q0P670 501 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 FUT2Q10981 343 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 PTPN14Q15678 1187 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 CEP55Q53EZ4 464 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 RNF20Q5VTR2 975 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 PLPPR4Q7Z2D5 763 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 ZBTB44Q8NCP5 570 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 TNPO1Q92973 898 aaKnown RBP11.05□□□□□ -0.64
USP39-212ENST00000465514 DOCK6Q96HP0 2047 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 TCEANC2Q96MN5 208 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 AGO4Q9HCK5 861 aaKnown RBP11.05□□□□□ -0.64
USP39-212ENST00000465514 RBM28Q9NW13 759 aaKnown RBP11.05□□□□□ -0.64
USP39-212ENST00000465514 ZSCAN32Q9NX65 697 aa11.05□□□□□ -0.64
USP39-212ENST00000465514 GMEB2Q9UKD1 530 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms