RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 ZNF668Q96K58 619 aaPredicted RBP16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 POP1Q99575 1024 aaKnown RBP16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 TLE6Q9H808 572 aa16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 C11orf16Q9NQ32 467 aa16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 CYP26B1Q9NR63 512 aa16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 CLEC1BQ9P126 229 aa16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 SUCLA2Q9P2R7 463 aaPredicted RBP16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 PUF60Q9UHX1 559 aaKnown RBP16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 ARIH1Q9Y4X5 557 aaPredicted RBP16.11■□□□□ 0.17
SNRNP40-203ENST00000463988 PLXNA4Q9HCM2 1894 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 A0A087WZ62 844 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 FDPSP14324 419 aaKnown RBP16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 EPHA7Q15375 998 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 CLUL1Q15846 466 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 KCNT2Q6UVM3 1135 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 LRRC55Q6ZSA7 311 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 C4orf19Q8IY42 314 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 SLFN12Q8IYM2 578 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 SLC7A3Q8WY07 619 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 MRPS27Q92552 414 aaKnown RBP16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 ZNF558Q96NG5 402 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 FDXACB1Q9BRP7 624 aaPredicted RBP16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 BRMS1Q9HCU9 246 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 GJB4Q9NTQ9 266 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 HCSTQ9UBK5 93 aa16.1■□□□□ 0.17
SNRNP40-203ENST00000463988 MARCH6O60337 910 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 BAG4O95429 457 aaKnown RBP16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 SKIP12755 728 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 ATF7P17544 494 aaPredicted RBP16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 FGFR4P22455 802 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 KRT2P35908 639 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 RFC5P40937 340 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 ERVFC1P60507 584 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 KRT17Q04695 432 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 ME3Q16798 604 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 CLLU1OSQ5K130 101 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 RBM23Q86U06 439 aaKnown RBP16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 RHPN2Q8IUC4 686 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 SMRP1Q8NCR6 262 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 TNFRSF25Q93038 417 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 GTF3C6Q969F1 213 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 SH2D3AQ9BRG2 576 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 MRPL9Q9BYD2 267 aaKnown RBP16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 DHX33Q9H6R0 707 aaKnown RBP16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 NGRNQ9NPE2 291 aaKnown RBP16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 SPG21Q9NZD8 308 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 RAPGEFL1Q9UHV5 662 aa16.09■□□□□ 0.17
SNRNP40-203ENST00000463988 CARNS1A5YM72 827 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 DCXO43602 365 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 GAS2O43903 313 aaKnown RBP16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 ZNF623O75123 536 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 CSDE1O75534 798 aaKnown RBP16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 GLP2RO95838 553 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 PHKA2P46019 1235 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 NPEPPSP55786 919 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 DUSP6Q16828 381 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 EARS2Q5JPH6 523 aaKnown RBP16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 PLA2G4FQ68DD2 849 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 OTUD6AQ7L8S5 288 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 RNF169Q8NCN4 708 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 CEP170P1Q96L14 293 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 PCDHGC5Q9Y5F6 944 aa16.08■□□□□ 0.16
SNRNP40-203ENST00000463988 PRR33A8MZF0 331 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 RAB27AP51159 221 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 SPIRE1Q08AE8 756 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 NR5A1Q13285 461 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 TWF2Q6IBS0 349 aaKnown RBP16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 TMEM184AQ6ZMB5 413 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 POTEDQ86YR6 584 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 NECAB1Q8N987 351 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 NSUN7Q8NE18 718 aaKnown RBP16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 HELQQ8TDG4 1101 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 PSPC1Q8WXF1 523 aaKnown RBP16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 LXNQ9BS40 222 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 ZSWIM4Q9H7M6 989 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 IFT122Q9HBG6 1241 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 WRAP73Q9P2S5 460 aaPredicted RBP16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 HCN4Q9Y3Q4 1203 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 COL4A3BPQ9Y5P4 624 aa16.07■□□□□ 0.16
SNRNP40-203ENST00000463988 PER2O15055 1255 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 ASAP2O43150 1006 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 LARGE1O95461 756 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 SRGAP2BP0DMP2 458 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 YWHABP31946 246 aaKnown RBP16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 NEK4P51957 841 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 POLGP54098 1239 aaPredicted RBP16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 KCNC3Q14003 757 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 CATSPER4Q7RTX7 472 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 SRGAP1Q7Z6B7 1085 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 KSR1Q8IVT5 923 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 SLC39A11Q8N1S5 342 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 ZNF579Q8NAF0 562 aaKnown RBP16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 TCP11Q8WWU5 503 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 PRPF31Q8WWY3 499 aaKnown RBP16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 NLRP4Q96MN2 994 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 TCF25Q9BQ70 676 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 RGL1Q9NZL6 768 aa16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 BARX2Q9UMQ3 279 aaPredicted RBP16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 PIN4Q9Y237 131 aaKnown RBP16.06■□□□□ 0.16
SNRNP40-203ENST00000463988 FAM86C2PA6NEL3 165 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms