RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 OVOS1Q6IE37 1185 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 GK5Q6ZS86 529 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 CLASRPQ8N2M8 674 aaKnown RBP8.77□□□□□ -1.01
USP54-208ENST00000461520 MAGEB6Q8N7X4 407 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 MIGA1Q8NAN2 632 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 TMEM87AQ8NBN3 555 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP54-208ENST00000461520 KIF1BPQ96EK5 621 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 ASCC2Q9H1I8 757 aaPredicted RBP8.77□□□□□ -1.01
USP54-208ENST00000461520 NSUN3Q9H649 340 aaKnown RBP8.77□□□□□ -1.01
USP54-208ENST00000461520 ANTXR1Q9H6X2 564 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 SP110Q9HB58 689 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 TMOD4Q9NZQ9 345 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 GMIPQ9P107 970 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 ZBTB21Q9ULJ3 1066 aa8.77□□□□□ -1.01
USP54-208ENST00000461520 ARID1BQ8NFD5 2236 aaPredicted RBP8.77□□□□□ -1.01
USP54-208ENST00000461520 RAB11FIP3O75154 756 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 SGPL1O95470 568 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 ZNF16P17020 682 aaPredicted RBP8.76□□□□□ -1.01
USP54-208ENST00000461520 MCM4P33991 863 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 APOBRQ0VD83 1088 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 CLEC16AQ2KHT3 1053 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 TATDN1Q6P1N9 297 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 SYDE1Q6ZW31 735 aaPredicted RBP8.76□□□□□ -1.01
USP54-208ENST00000461520 U2AF1L4Q8WU68 220 aaKnown RBP8.76□□□□□ -1.01
USP54-208ENST00000461520 RIOK1Q9BRS2 568 aaKnown RBP8.76□□□□□ -1.01
USP54-208ENST00000461520 EHMT1Q9H9B1 1298 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 IL1RAPL2Q9NP60 686 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 ZBTB40Q9NUA8 1239 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 MORF4L1Q9UBU8 362 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 SAP30BPQ9UHR5 308 aaKnown RBP8.76□□□□□ -1.01
USP54-208ENST00000461520 SERPINB13Q9UIV8 391 aa8.76□□□□□ -1.01
USP54-208ENST00000461520 SIPA1L1O43166 1804 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 FOCADQ5VW36 1801 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 ATAD5Q96QE3 1844 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 KRTAP4-8A0A0G2JLE6 195 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 IFIT2P09913 472 aaKnown RBP8.75□□□□□ -1.01
USP54-208ENST00000461520 HERVK_113P62684 666 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 IRX3P78415 501 aaPredicted RBP8.75□□□□□ -1.01
USP54-208ENST00000461520 TMCO4Q5TGY1 634 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 UBE2Q1Q7Z7E8 422 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 HTATIP2Q9BUP3 242 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 EBF1Q9UH73 591 aa8.75□□□□□ -1.01
USP54-208ENST00000461520 GH2P01242 217 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 PDE6AP16499 860 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 USP14P54578 494 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 TEKQ02763 1124 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 NMIQ13287 307 aaPredicted RBP8.74□□□□□ -1.01
USP54-208ENST00000461520 SHROOM1Q2M3G4 852 aaPredicted RBP8.74□□□□□ -1.01
USP54-208ENST00000461520 CERKLQ49MI3 558 aaPredicted RBP8.74□□□□□ -1.01
USP54-208ENST00000461520 TIGD5Q53EQ6 642 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 SLC9C2Q5TAH2 1124 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 SIRT2Q8IXJ6 389 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 PDZD8Q8NEN9 1154 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 GPRC5AQ8NFJ5 357 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 ATG4CQ96DT6 458 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 C12orf42Q96LP6 360 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 P2RX7Q99572 595 aaKnown RBP8.74□□□□□ -1.01
USP54-208ENST00000461520 CRNKL1Q9BZJ0 848 aaKnown RBP8.74□□□□□ -1.01
USP54-208ENST00000461520 RNF32Q9H0A6 362 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 BCL11AQ9H165 835 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 CABP5Q9NP86 173 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 RCAN3Q9UKA8 241 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 GJD2Q9UKL4 321 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 CDK5RAP2Q96SN8 1893 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 ALPK3Q96L96 1907 aa8.74□□□□□ -1.01
USP54-208ENST00000461520 MYO5AQ9Y4I1 1855 aaKnown RBP8.73□□□□□ -1.01
USP54-208ENST00000461520 GOLIM4O00461 696 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 HMGCRP04035 888 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 MAPK4P31152 587 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 PLCD1P51178 756 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 GABPAQ06546 454 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 RAB3GAP1Q15042 981 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 ABCB5Q2M3G0 1257 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 CDCP2Q5VXM1 449 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 TMC3Q7Z5M5 1100 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 NKD1Q969G9 470 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 EAF1Q96JC9 268 aaPredicted RBP8.73□□□□□ -1.01
USP54-208ENST00000461520 DNAJC2Q99543 621 aaKnown RBP8.73□□□□□ -1.01
USP54-208ENST00000461520 PRO3102Q9H379 93 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 CNNM2Q9H8M5 875 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 TXNRD2Q9NNW7 524 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 RBPJLQ9UBG7 517 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 NR2E3Q9Y5X4 410 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 ZNF532Q9HCE3 1301 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 DOCK3Q8IZD9 2030 aa8.73□□□□□ -1.01
USP54-208ENST00000461520 TCRBV5S4A2TA0A5A2 114 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 TFRCP02786 760 aaKnown RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 ATP5JP18859 108 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 SHMT1P34896 483 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 RAP1GAPP47736 663 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 RNF4P78317 190 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 SNW1Q13573 536 aaKnown RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 NLRC3Q7RTR2 1065 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 REXO1Q8N1G1 1221 aaKnown RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 FBXO15Q8NCQ5 510 aaPredicted RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 BHLHE22Q8NFJ8 381 aaPredicted RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 SOCS4Q8WXH5 440 aa8.72□□□□□ -1.01
USP54-208ENST00000461520 DHX38Q92620 1227 aaKnown RBP8.72□□□□□ -1.01
USP54-208ENST00000461520 DEFB118Q96PH6 123 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms