RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 LXNQ9BS40 222 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 EPHX3Q9H6B9 360 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 PCDHB12Q9Y5F1 795 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 DKC1O60832 514 aaKnown RBP eCLIP23.23■■□□□ 1.31
SDC1-205ENST00000447124 GUCY1B3Q02153 619 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 CLLU1OSQ5K130 101 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 ZNF410Q86VK4 478 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 CCDC83Q8IWF9 413 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 TMEM143Q96AN5 459 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 MTMR9Q96QG7 549 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 HSD17B14Q9BPX1 270 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 JPH2Q9BR39 696 aaPredicted RBP23.23■■□□□ 1.31
SDC1-205ENST00000447124 IFT122Q9HBG6 1241 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 AAASQ9NRG9 546 aa23.23■■□□□ 1.31
SDC1-205ENST00000447124 FGF18O76093 207 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 YWHABP31946 246 aaKnown RBP23.22■■□□□ 1.31
SDC1-205ENST00000447124 ERVFC1P60507 584 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 CYP4A11Q02928 519 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 PUS10Q3MIT2 529 aaKnown RBP23.22■■□□□ 1.31
SDC1-205ENST00000447124 TPH2Q8IWU9 490 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 RNF169Q8NCN4 708 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 PRPF31Q8WWY3 499 aaKnown RBP23.22■■□□□ 1.31
SDC1-205ENST00000447124 EIF2AK1Q9BQI3 630 aaKnown RBP23.22■■□□□ 1.31
SDC1-205ENST00000447124 TMEM60Q9H2L4 133 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 ZSWIM4Q9H7M6 989 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 CHST12Q9NRB3 414 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 PCDHA12Q9UN75 941 aa23.22■■□□□ 1.31
SDC1-205ENST00000447124 EOMESO95936 686 aa23.21■■□□□ 1.31
SDC1-205ENST00000447124 TRIM29Q14134 588 aa23.21■■□□□ 1.31
SDC1-205ENST00000447124 CALCRLQ16602 461 aa23.21■■□□□ 1.31
SDC1-205ENST00000447124 NLRP4Q96MN2 994 aa23.21■■□□□ 1.31
SDC1-205ENST00000447124 BMP2KQ9NSY1 1161 aaPredicted RBP23.21■■□□□ 1.31
SDC1-205ENST00000447124 PPME1Q9Y570 386 aa23.21■■□□□ 1.31
SDC1-205ENST00000447124 HOXA2O43364 376 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 TBX10O75333 385 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 TXKP42681 527 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 UBE3AQ05086 875 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 CLUL1Q15846 466 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 XKR9Q5GH70 373 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 RBM23Q86U06 439 aaKnown RBP23.2■■□□□ 1.3
SDC1-205ENST00000447124 THNSL1Q8IYQ7 743 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 GJD3Q8N144 294 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 HELQQ8TDG4 1101 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 SLC7A3Q8WY07 619 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 TRAIPQ9BWF2 469 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 INO80BQ9C086 356 aaPredicted RBP23.2■■□□□ 1.3
SDC1-205ENST00000447124 TTC12Q9H892 705 aaPredicted RBP23.2■■□□□ 1.3
SDC1-205ENST00000447124 MINDY3Q9H8M7 445 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 DACT1Q9NYF0 836 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 COL4A3BPQ9Y5P4 624 aa23.2■■□□□ 1.3
SDC1-205ENST00000447124 A0A087WWV3 80 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 FSCN2O14926 492 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 SRGAP2CP0DJJ0 459 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 LAG3P18627 525 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 ATP2B1P20020 1258 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 PBX3P40426 434 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 RFC5P40937 340 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 PHKA2P46019 1235 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 NRIP1P48552 1158 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 POLGP54098 1239 aaPredicted RBP23.19■■□□□ 1.3
SDC1-205ENST00000447124 PLCB3Q01970 1234 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 KCNT2Q6UVM3 1135 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 OTUD6AQ7L8S5 288 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 MICAL1Q8TDZ2 1067 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 LLPHQ9BRT6 129 aaKnown RBP23.19■■□□□ 1.3
SDC1-205ENST00000447124 XPNPEP1Q9NQW7 623 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 CLEC1BQ9P126 229 aa23.19■■□□□ 1.3
SDC1-205ENST00000447124 PLXNA4Q9HCM2 1894 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 MEIS3P2A8K0S8 358 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 PER2O15055 1255 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 NEMFO60524 1076 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 LYPLA2O95372 231 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 SFPQP23246 707 aaKnown RBP eCLIP23.18■■□□□ 1.35e-6■□□□□ 9.6
SDC1-205ENST00000447124 LAMTOR4Q0VGL1 99 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 CATSPER4Q7RTX7 472 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 ABI1Q8IZP0 508 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 EFHBQ8N7U6 833 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 LPPQ93052 612 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 TLR9Q9NR96 1032 aa23.18■■□□□ 1.3
SDC1-205ENST00000447124 MBTPS2O43462 519 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 EMC2Q15006 297 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 CSPP1Q1MSJ5 1256 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 LONRF3Q496Y0 759 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 TWF2Q6IBS0 349 aaKnown RBP23.17■■□□□ 1.3
SDC1-205ENST00000447124 FERMT3Q86UX7 667 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 EXOC8Q8IYI6 725 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 PSPC1Q8WXF1 523 aaKnown RBP23.17■■□□□ 1.3
SDC1-205ENST00000447124 MRPS27Q92552 414 aaKnown RBP23.17■■□□□ 1.3
SDC1-205ENST00000447124 C8orf76Q96K31 380 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 MSLNLQ96KJ4 702 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 ZSCAN31Q96LW9 406 aaPredicted RBP23.17■■□□□ 1.3
SDC1-205ENST00000447124 TLE6Q9H808 572 aa23.17■■□□□ 1.3
SDC1-205ENST00000447124 PIN4Q9Y237 131 aaKnown RBP23.17■■□□□ 1.3
SDC1-205ENST00000447124 ZNF623O75123 536 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 GLP2RO95838 553 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 HOXA11P31270 313 aaPredicted RBP23.16■■□□□ 1.3
SDC1-205ENST00000447124 RBM10P98175 930 aaKnown RBP23.16■■□□□ 1.3
SDC1-205ENST00000447124 SRGAP1Q7Z6B7 1085 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 LRRC43Q8N309 656 aa23.16■■□□□ 1.3
SDC1-205ENST00000447124 PPP2R3CQ969Q6 453 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms