RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 CCDC28BQ9BUN5 200 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 NPATQ14207 1427 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 METAP2P50579 478 aaKnown RBP eCLIP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 TWF2Q6IBS0 349 aaKnown RBP3.65□□□□□ -1.83
SYNE1-212ENST00000423061 THAP11Q96EK4 314 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SEZ6LQ9BYH1 1024 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 MARCH7Q9H992 704 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 SEPT10Q9P0V9 454 aa3.65□□□□□ -1.83
SYNE1-212ENST00000423061 ZC3H11AO75152 810 aaKnown RBP eCLIP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RARAP10276 462 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PLCB3Q01970 1234 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GJB4Q9NTQ9 266 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 UCKL1Q9NWZ5 548 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TCEA1P23193 301 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 HSD17B3P37058 310 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CARD14Q9BXL6 1004 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GPR75-ASB3A0A0A6YYF3 556 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NUTM2BA6NNL0 878 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NUTM2EB1AL46 878 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 OR52E8Q6IFG1 317 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SLC25A41Q8N5S1 370 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GDPD5Q8WTR4 605 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 OSBPL6Q9BZF3 934 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 C19orf44Q9H6X5 657 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GIT1Q9Y2X7 761 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ASB3Q9Y575 518 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ABCC4O15439 1325 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZSCAN5CA6NGD5 496 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CLPPQ16740 277 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TAS2R42Q7RTR8 314 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 VPS50Q96JG6 964 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ANKRD2Q9GZV1 360 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DHX36Q9H2U1 1008 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 FLT4P35916 1363 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RSPH10B2B2RC85 870 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RSPH10BP0C881 870 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 EPHB2P29323 1055 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TRIM25Q14258 630 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ENAHQ8N8S7 591 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZSCAN5BA6NJL1 495 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ASIC1P78348 528 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NR1D2Q14995 579 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 C4orf22Q6V702 233 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DHTKD1Q96HY7 919 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TCF7P36402 384 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PHC1P78364 1004 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NPLOC4Q8TAT6 608 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SLC4A4Q9Y6R1 1079 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TTC21AQ8NDW8 1320 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZFYVE16Q7Z3T8 1539 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DAB1O75553 588 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 LYNP07948 512 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DSG1Q02413 1049 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TAF7Q15545 349 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 IGSF11Q5DX21 431 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 AGAP9Q5VTM2 703 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CYP4F22Q6NT55 531 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SIX6OS1Q8N1H7 587 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 VPS37AQ8NEZ2 397 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ERP27Q96DN0 273 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NLRP4Q96MN2 994 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TOR3AQ9H497 397 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RGL2O15211 777 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PRPF18Q99633 342 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KIF24Q5T7B8 1368 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TNPO2O14787 897 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GABBR2O75899 941 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KRT8P05787 483 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 FOSL1P15407 271 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 MDH1BQ5I0G3 518 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CHCHD4Q8N4Q1 142 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 SH3TC2Q8TF17 1288 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GLMNQ92990 594 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TUBGCP5Q96RT8 1024 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 TLR7Q9NYK1 1049 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DDX25Q9UHL0 483 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ATPIF1Q9UII2 106 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GOLGA8RI6L899 631 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 MCM7P33993 719 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 PRKCIP41743 596 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF844Q08AG5 666 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RSPH3Q86UC2 560 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 RNF25Q96BH1 459 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZMYND8Q9ULU4 1186 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 GRIN2DO15399 1336 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 A6NL46 340 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ZBBXA8MT70 800 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CLPTM1O96005 669 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ATF4P18848 351 aaPredicted RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 VARSP26640 1264 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CASP1P29466 404 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ADCY8P40145 1251 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ARHGAP24Q8N264 748 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DCDC2CA8MYV0 355 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ARHGEF9O43307 516 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 ATP5HO75947 161 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 CLK3P49761 638 aaKnown RBP3.64□□□□□ -1.83
SYNE1-212ENST00000423061 DPY19L2Q6NUT2 758 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 NLRP9Q7RTR0 991 aa3.64□□□□□ -1.83
SYNE1-212ENST00000423061 KRT26Q7Z3Y9 468 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms