RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GRIK1P39086 918 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 SERPINB10P48595 397 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 HSD17B4P51659 736 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 HPCAP84074 193 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TMEM259Q4ZIN3 620 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 NAA35Q5VZE5 725 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ST13P4Q8IZP2 240 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PHACTR3Q96KR7 559 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 RMDN3Q96TC7 470 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 LGR6Q9HBX8 967 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PSD3Q9NYI0 1048 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 PPP2R2CQ9Y2T4 447 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 CYP27A1Q02318 531 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 GPIHBP1Q8IV16 184 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 MRFAP1L1Q96HT8 127 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF556Q9HAH1 456 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 TRPC7Q9HCX4 862 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF302Q9NR11 478 aa7.3□□□□□ -1.24
SCN1A-204ENST00000423058 GFPT2O94808 682 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ASMTLO95671 621 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 RLBP1P12271 317 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ABCE1P61221 599 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PPARDQ03181 441 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SPARCL1Q14515 664 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SLC9A5Q14940 896 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TRIM72Q6ZMU5 477 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MIGA2Q7L4E1 593 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TAS2R42Q7RTR8 314 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SPATA2LQ8IUW3 424 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF496Q96IT1 587 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 RUBCNLQ9H714 662 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TRAF3IP3Q9Y228 551 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ATP8A1Q9Y2Q0 1164 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 FAM32AQ9Y421 112 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 UBE4BO95155 1302 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 USP17L5A8MUK1 530 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SREBF2Q12772 1141 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ARHGEF7Q14155 803 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MAPRE2Q15555 327 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HIF1AQ16665 826 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PTPROQ16827 1216 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ACTR5Q9H9F9 607 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MRGBPQ9NV56 204 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 RWDD2AQ9UIY3 292 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ASB14A6NK59 587 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 COPEO14579 308 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PRRG1O14668 218 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 JAK2O60674 1132 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PYGMP11217 842 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 AP3M2P53677 418 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 RWDD2BP57060 319 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MRPL28Q13084 256 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ANO4Q32M45 955 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PREPLQ4J6C6 727 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PPP6R3Q5H9R7 873 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ZNF438Q7Z4V0 828 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TBC1D1Q86TI0 1168 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TRIM48Q8IWZ4 208 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 BCAS4Q8TDM0 211 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MYCBPQ99417 103 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 FAM135BQ49AJ0 1406 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 CLIC2O15247 247 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 BRAFP15056 766 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 DR1Q01658 176 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ADCY1Q08828 1119 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HEATR6Q6AI08 1181 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 RASSF3Q86WH2 238 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 NUDCD3Q8IVD9 361 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TRIML2Q8N7C3 387 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TMEM35BQ8NCS4 154 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 AIPL1Q9NZN9 384 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 CHL1O00533 1208 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 EIF4A1P60842 406 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 C16orf87Q6PH81 154 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TNIP2Q8NFZ5 429 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 HES6Q96HZ4 224 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 TNIP3Q96KP6 325 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ZMYND12Q9H0C1 365 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 THAP9Q9H5L6 903 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PAPOLBQ9NRJ5 636 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 H2AFY2Q9P0M6 372 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ATF5Q9Y2D1 282 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PCDHB7Q9Y5E2 793 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 UBN2Q6ZU65 1347 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 KAT6AQ92794 2004 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ANKARQ7Z5J8 1434 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 FAM170AA1A519 330 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ERVV-1B6SEH8 477 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 IL13P35225 146 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 PEX3P56589 373 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 CDK17Q00537 523 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 KLHL38Q2WGJ6 581 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 ANKS6Q68DC2 871 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 CENPPQ6IPU0 288 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MYRIPQ8NFW9 859 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 NSUN6Q8TEA1 469 aaKnown RBP7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SPATA33Q96N06 139 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 MXD3Q9BW11 206 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SH3BP1Q9Y3L3 701 aa7.29□□□□□ -1.24
SCN1A-204ENST00000423058 SPACA6W5XKT8 324 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms