RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 RAPGEF5Q92565 580 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 ELMO3Q96BJ8 720 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 CCDC17Q96LX7 622 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 RUFY1Q96T51 708 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 PCDHB18PQ96TA0 734 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 RPTORQ8N122 1335 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 PIK3CDO00329 1044 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 EPS15P42566 896 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 SPP2Q13103 211 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 SLC5A5Q92911 643 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 STK33Q9BYT3 514 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 UNC45AQ9H3U1 944 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 PPANQ9NQ55 473 aaKnown RBP10.72□□□□□ -0.69
SS18-203ENST00000415083 INTUQ9ULD6 942 aa10.72□□□□□ -0.69
SS18-203ENST00000415083 CHMP2AO43633 222 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 CAND2O75155 1236 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 TMEM253P0C7T8 217 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 CHRNB2P17787 502 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 PTENP60484 403 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 PPP3CAQ08209 521 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 SF3B2Q13435 895 aaKnown RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 SIX1Q15475 284 aaPredicted RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 FAM228AQ86W67 206 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 NAP1L4Q99733 375 aaKnown RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 JPH2Q9BR39 696 aaPredicted RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 TRIM31Q9BZY9 425 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 ZC3H12CQ9C0D7 883 aaKnown RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 INTS2Q9H0H0 1204 aaKnown RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 SHTN1A0MZ66 631 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 C5orf60A6NFR6 353 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 EIF3DO15371 548 aaKnown RBP eCLIP10.71□□□□□ -0.69
SS18-203ENST00000415083 FLOT1O75955 427 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 GH2P01242 217 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 PAEPP09466 180 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 INPP5BP32019 993 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 CTNNA1P35221 906 aaKnown RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 PPP2R5CQ13362 524 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 KIF22Q14807 665 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 MMS22LQ6ZRQ5 1243 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 TPH2Q8IWU9 490 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 TAF4BQ92750 862 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 C18orf8Q96DM3 657 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 GJD4Q96KN9 370 aaPredicted RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 NOVA2Q9UNW9 492 aaKnown RBP10.71□□□□□ -0.69
SS18-203ENST00000415083 CAPN7Q9Y6W3 813 aa10.71□□□□□ -0.69
SS18-203ENST00000415083 E7EVH7 732 aa10.71□□□□□ -0.7
SS18-203ENST00000415083 KIAA0391O15091 583 aaKnown RBP10.71□□□□□ -0.7
SS18-203ENST00000415083 HLA-DOAP06340 250 aa10.71□□□□□ -0.7
SS18-203ENST00000415083 PEX5P50542 639 aa10.71□□□□□ -0.7
SS18-203ENST00000415083 MAGOHP61326 146 aaKnown RBP10.71□□□□□ -0.7
SS18-203ENST00000415083 ZNF568Q3ZCX4 644 aa10.71□□□□□ -0.7
SS18-203ENST00000415083 YTHDF3Q7Z739 585 aaKnown RBP10.71□□□□□ -0.7
SS18-203ENST00000415083 MAGOHBQ96A72 148 aaKnown RBP10.71□□□□□ -0.7
SS18-203ENST00000415083 PI4KBQ9UBF8 816 aa10.71□□□□□ -0.7
SS18-203ENST00000415083 LOXHD1Q8IVV2 1947 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 RASSF9O75901 435 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 CYP2J2P51589 502 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 DHX9Q08211 1270 aaKnown RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 MYCT1Q8N699 235 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 PRELID2Q8N945 189 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.7□□□□□ -0.76e-8■■■■□ 26.7
SS18-203ENST00000415083 RFFLQ8WZ73 363 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 FAM107BQ9H098 131 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 SLITRK6Q9H5Y7 841 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 COL4A5P29400 1685 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 PSME4Q14997 1843 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 TMEM150BA6NC51 233 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 ATMINO43313 823 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 FERP16591 822 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 DRD4P21917 467 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 STAT1P42224 750 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 IFT88Q13099 833 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 GPATCH11Q8N954 259 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 UBLCP1Q8WVY7 318 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 CD101Q93033 1021 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 CENPHQ9H3R5 247 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 TDRD3Q9H7E2 651 aaKnown RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 METTL14Q9HCE5 456 aaKnown RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 LUC7LQ9NQ29 371 aaKnown RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 RGPD3A6NKT7 1758 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 RGPD4Q7Z3J3 1758 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 ATRNL1Q5VV63 1379 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 PHF20L1A8MW92 1017 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 CCDC188H7C350 402 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 CALCAP01258 141 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 ALAS1P13196 640 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 ANXA13P27216 316 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 PSMC2P35998 433 aaKnown RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 IRX3P78415 501 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 ACTN3Q08043 901 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 MKRN4PQ13434 485 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 ZNF746Q6NUN9 644 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 TMEM179Q6ZVK1 233 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 RDH13Q8NBN7 331 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 ATXN2LQ8WWM7 1075 aaKnown RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 BTBD6Q96KE9 485 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 ZNF317Q96PQ6 595 aaPredicted RBP10.7□□□□□ -0.7
SS18-203ENST00000415083 SH2D3AQ9BRG2 576 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 HERPUD2Q9BSE4 406 aa10.7□□□□□ -0.7
SS18-203ENST00000415083 COL20A1Q9P218 1284 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms