RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 FAM102BQ5T8I3 360 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 POTEGQ6S5H5 508 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 FERMT3Q86UX7 667 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 CMTR2Q8IYT2 770 aaKnown RBP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 INO80BQ9C086 356 aaPredicted RBP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 LRWD1Q9UFC0 647 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 MRPL42Q9Y6G3 142 aaKnown RBP16.51■□□□□ 0.23
LIMS4-201ENST00000413601 REV3LO60673 3130 aa16.51■□□□□ 0.23
LIMS4-201ENST00000413601 H3BNC9 293 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 DGAT1O75907 488 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 SFPQP23246 707 aaKnown RBP eCLIP16.5■□□□□ 0.23
LIMS4-201ENST00000413601 BMPR1AP36894 532 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 GPM6BQ13491 265 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 IL17AQ16552 155 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 CLP1Q92989 425 aaKnown RBP16.5■□□□□ 0.23
LIMS4-201ENST00000413601 NACC1Q96RE7 527 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 ATP6V0A4Q9HBG4 840 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 TMEM161AQ9NX61 479 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 PRUNE2Q8WUY3 3088 aa16.5■□□□□ 0.23
LIMS4-201ENST00000413601 TBKBP1A7MCY6 615 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 LAD1O00515 517 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 ASAP2O43150 1006 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 USO1O60763 962 aaKnown RBP16.49■□□□□ 0.23
LIMS4-201ENST00000413601 FGFR1P11362 822 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 CCT6AP40227 531 aaKnown RBP16.49■□□□□ 0.23
LIMS4-201ENST00000413601 PDIA5Q14554 519 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 ECM1Q16610 540 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 CATSPER4Q7RTX7 472 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 ECHDC2Q86YB7 292 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 IGSF22Q8N9C0 903 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 RNF149Q8NC42 400 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 ELAC1Q9H777 363 aaKnown RBP16.49■□□□□ 0.23
LIMS4-201ENST00000413601 MINDY3Q9H8M7 445 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 CHST12Q9NRB3 414 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 LMCD1Q9NZU5 365 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 DBR1Q9UK59 544 aaKnown RBP16.49■□□□□ 0.23
LIMS4-201ENST00000413601 RWDD3Q9Y3V2 267 aa16.49■□□□□ 0.23
LIMS4-201ENST00000413601 MYH11P35749 1972 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 VPS37CA5D8V6 355 aaPredicted RBP16.48■□□□□ 0.23
LIMS4-201ENST00000413601 PP2D1A8MPX8 630 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 C5orf67F2Z3F1 127 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 PRPHP41219 470 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 MXD4Q14582 209 aaPredicted RBP16.48■□□□□ 0.23
LIMS4-201ENST00000413601 SKIV2LQ15477 1246 aaKnown RBP16.48■□□□□ 0.23
LIMS4-201ENST00000413601 HAUS3Q68CZ6 603 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 DTHD1Q6ZMT9 781 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 MAEAQ7L5Y9 396 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 SRGAP1Q7Z6B7 1085 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 RNF169Q8NCN4 708 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 ASAP3Q8TDY4 903 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 RAB34Q9BZG1 259 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 FOXD4L1Q9NU39 408 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 DACT1Q9NYF0 836 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 PIN4Q9Y237 131 aaKnown RBP16.48■□□□□ 0.23
LIMS4-201ENST00000413601 MYH15Q9Y2K3 1946 aa16.48■□□□□ 0.23
LIMS4-201ENST00000413601 A0A0U1RQF3 1178 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 K7ELQ4 463 aaPredicted RBP16.47■□□□□ 0.23
LIMS4-201ENST00000413601 RB1P06400 928 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 MUTP22033 750 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 CDC25AP30304 524 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 ARL2P36404 184 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 PHKA2P46019 1235 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 ATP2C1P98194 919 aaPredicted RBP16.47■□□□□ 0.23
LIMS4-201ENST00000413601 TWF2Q6IBS0 349 aaKnown RBP16.47■□□□□ 0.23
LIMS4-201ENST00000413601 SNX29Q8TEQ0 813 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 MRPL38Q96DV4 380 aaKnown RBP16.47■□□□□ 0.23
LIMS4-201ENST00000413601 C11orf84Q9BUA3 381 aaPredicted RBP16.47■□□□□ 0.23
LIMS4-201ENST00000413601 POLR3FQ9H1D9 316 aaPredicted RBP16.47■□□□□ 0.23
LIMS4-201ENST00000413601 GPRC5CQ9NQ84 441 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 RNF19AQ9NV58 838 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 HCSTQ9UBK5 93 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 KIAA1024Q9UPX6 916 aa16.47■□□□□ 0.23
LIMS4-201ENST00000413601 TCF20Q9UGU0 1960 aaKnown RBP16.46■□□□□ 0.23
LIMS4-201ENST00000413601 UNC80Q8N2C7 3258 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 ARHGEF35A5YM69 484 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 EOMESO95936 686 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 ATF7P17544 494 aaPredicted RBP16.46■□□□□ 0.23
LIMS4-201ENST00000413601 PDCP20941 246 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 GLRA2P23416 452 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 PTENP60484 403 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 CAPSQ13938 189 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 TFDP1Q14186 410 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 PTPROQ16827 1216 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 SPOUT1Q5T280 376 aaKnown RBP16.46■□□□□ 0.23
LIMS4-201ENST00000413601 PADI6Q6TGC4 694 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 ZNF598Q86UK7 904 aaKnown RBP16.46■□□□□ 0.23
LIMS4-201ENST00000413601 INTS4Q96HW7 963 aaKnown RBP16.46■□□□□ 0.23
LIMS4-201ENST00000413601 CASD1Q96PB1 797 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 PLVAPQ9BX97 442 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 AGPAT5Q9NUQ2 364 aa16.46■□□□□ 0.23
LIMS4-201ENST00000413601 TYW1Q9NV66 732 aaKnown RBP16.46■□□□□ 0.23
LIMS4-201ENST00000413601 GRM6O15303 877 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 HOXA2O43364 376 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 LONRF3Q496Y0 759 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 CLLU1OSQ5K130 101 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 KRT79Q5XKE5 535 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 BRAPQ7Z569 592 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 MCPH1Q8NEM0 835 aa16.45■□□□□ 0.22
LIMS4-201ENST00000413601 MMTAG2Q9BU76 263 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms