RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 ARHGAP28Q9P2N2 729 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 MAGEC2Q9UBF1 373 aaPredicted RBP7.32□□□□□ -1.24
VPS41-204ENST00000413141 PCDHB13Q9Y5F0 798 aa7.32□□□□□ -1.24
VPS41-204ENST00000413141 PHLPP2Q6ZVD8 1323 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 DENND3A2RUS2 1198 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 MYADML2A6NDP7 307 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 CCDC169A6NNP5 214 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 H0YCG3 227 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 SEPT4O43236 478 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 ADCY3O60266 1144 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 DUSP11O75319 330 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 FGFR1OPO95684 399 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 NR3C1P04150 777 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 TPM3P06753 285 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 INSRRP14616 1297 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 HSPA6P17066 643 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 NR2F2P24468 414 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 CCND3P30281 292 aaPredicted RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 ABCD1P33897 745 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 COPB1P53618 953 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 SMTNP53814 917 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 GJA9P57773 515 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 IRX5P78411 483 aaPredicted RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 BEX3Q00994 111 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 PPFIA1Q13136 1202 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 DRP2Q13474 957 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 CAPSQ13938 189 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 PPP2R5AQ15172 486 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 NFIL3Q16649 462 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 FSCN1Q16658 493 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 BRDTQ58F21 947 aaPredicted RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 MAP3K21Q5TCX8 1036 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 MAP4K3Q8IVH8 894 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 VSTM4Q8IW00 320 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 LRRC71Q8N4P6 559 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 LINC01465Q8N7H1 131 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 GOLGA5Q8TBA6 731 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 RAET1EQ8TD07 263 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 TCP11Q8WWU5 503 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 PSPC1Q8WXF1 523 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 KAT2BQ92831 832 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 EEF2KMTQ96G04 330 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 IFT74Q96LB3 600 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 ACCSQ96QU6 501 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 JPH2Q9BR39 696 aaPredicted RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 NTPCRQ9BSD7 190 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 AP5M1Q9H0R1 490 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 GBP3Q9H0R5 595 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 UPF3AQ9H1J1 476 aaKnown RBP7.31□□□□□ -1.24
VPS41-204ENST00000413141 IKZF4Q9H2S9 585 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 TMEM206Q9H813 350 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 AGPAT3Q9NRZ7 376 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 TAB2Q9NYJ8 693 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 TBX20Q9UMR3 447 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 FRMPD3Q5JV73 1810 aa7.31□□□□□ -1.24
VPS41-204ENST00000413141 LRRC10BA6NIK2 292 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 LRRIQ4A6NIV6 560 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 LGALS16A8MUM7 142 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 HAS3O00219 553 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 CETN3O15182 167 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 SLC16A3O15427 465 aaKnown RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 GNA14O95837 355 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 MYL3P08590 195 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 C6orf222P0C671 652 aaPredicted RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 RARBP10826 455 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 SCP2P22307 547 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 RPL13P26373 211 aaKnown RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 CNGA1P29973 690 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 CLCN3P51790 818 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 PRMT2P55345 433 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 MARSP56192 900 aaKnown RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 IGBP1P78318 339 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 NKX3-2P78367 333 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 PURAQ00577 322 aaKnown RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 MAP2K1Q02750 393 aaPredicted RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 ADAM9Q13443 819 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 MFSD10Q14728 455 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 NR1I3Q14994 352 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 GRIK4Q16099 956 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 KIAA0753Q2KHM9 967 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 FILIP1LQ4L180 1135 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 MIIPQ5JXC2 388 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 MARCH8Q5T0T0 291 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 IER5Q5VY09 327 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 CDCA2Q69YH5 1023 aaPredicted RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 HS2ST1Q7LGA3 356 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 TAS1R3Q7RTX0 852 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 FILIP1Q7Z7B0 1213 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 C12orf56Q8IXR9 622 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 SYCP3Q8IZU3 236 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 SPC24Q8NBT2 197 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 RETREG2Q8NC44 543 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 SLAIN1Q8ND83 568 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 DEPTORQ8TB45 409 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 PXYLP1Q8TE99 480 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 TMEM174Q8WUU8 243 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 LMBR1Q8WVP7 490 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 PRPF31Q8WWY3 499 aaKnown RBP7.3□□□□□ -1.24
VPS41-204ENST00000413141 ZBTB10Q96DT7 871 aa7.3□□□□□ -1.24
VPS41-204ENST00000413141 TUBGCP2Q9BSJ2 902 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms