RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CYP2J2P51589 502 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 TRIM72Q6ZMU5 477 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 CALML6Q8TD86 181 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 NDST4Q9H3R1 872 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 DDX56Q9NY93 547 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 SRPRBQ9Y5M8 271 aaKnown RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 K7ENM7 598 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 NUP62P37198 522 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 LIG4P49917 911 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 YWHAHQ04917 246 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 RESP18Q5W5W9 173 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 TTC33Q6PID6 262 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-206ENST00000409809 KRT27Q7Z3Y8 459 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 LINC00301Q8NCQ3 95 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 KLHL41O60662 606 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 IL12RB1P42701 662 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ARL13BQ3SXY8 428 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 HMG20AQ9NP66 347 aa13.69□□□□□ -0.22
COL6A3-206ENST00000409809 ATP8B3O60423 1300 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 TNFAIP8O95379 198 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 SLC1A4P43007 532 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 SCRN1Q12765 414 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ARHGAP27Q6ZUM4 889 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 EFL1Q7Z2Z2 1120 aaKnown RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 TUBGCP4Q9UGJ1 667 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 MAN1B1Q9UKM7 699 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ITIH6Q6UXX5 1313 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 RAB15P59190 212 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 CRELD2Q6UXH1 353 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 MLPHQ9BV36 600 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 KLHL4Q9C0H6 718 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 SLC7A5Q01650 507 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 NME9Q86XW9 330 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ENOPH1Q9UHY7 261 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 GGA2Q9UJY4 613 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 IRAK1P51617 712 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 PDAP1Q13442 181 aaKnown RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 NAA35Q5VZE5 725 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 CENPPQ6IPU0 288 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 WDR93Q6P2C0 686 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 FAM47EQ6ZV65 393 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 TSSK1BQ9BXA7 367 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ST7Q9NRC1 585 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 EDC4Q6P2E9 1401 aaKnown RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 SRRM3A6NNA2 597 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 FAM200BP0CF97 657 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 TBL3Q12788 808 aaKnown RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 KRT31Q15323 416 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 C1orf50Q9BV19 199 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 APPL1Q9UKG1 709 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 KDRP35968 1356 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 NFIBO00712 420 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 DYMQ7RTS9 669 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 YTHDF3Q7Z739 585 aaKnown RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 LONP2Q86WA8 852 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 FAM81AQ8TBF8 368 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 TIMMDC1Q9NPL8 285 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ARHGEF5Q12774 1597 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 PSMC3P17980 439 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 ALKBH5Q6P6C2 394 aaKnown RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 CAPN12Q6ZSI9 719 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 METTL22Q9BUU2 404 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-206ENST00000409809 SAYSD1Q9NPB0 183 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 KLHL20Q9Y2M5 609 aa13.68□□□□□ -0.22
COL6A3-206ENST00000409809 RPAP1Q9BWH6 1393 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 PRPSAP2O60256 369 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 RXRAP19793 462 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 LRRC49Q8IUZ0 686 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 BEST2Q8NFU1 509 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 EYA3Q99504 573 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ATP5J2-PTCD1G3V325 749 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 RALBP11234 206 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 EIF2B2P49770 351 aaKnown RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 DMC1Q14565 340 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 PLS1Q14651 629 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ZBTB41Q5SVQ8 909 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 NAIF1Q69YI7 327 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 CATSPER3Q86XQ3 398 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 DEPTORQ8TB45 409 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 COPG2Q9UBF2 871 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 FCHO2Q0JRZ9 810 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 CXCR5P32302 372 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 FANCBQ8NB91 859 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 SH3GLB2Q9NR46 395 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 FMNL1O95466 1100 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 MLH1P40692 756 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 NSL1Q96IY1 281 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ZBED2Q9BTP6 218 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 DNALI1O14645 258 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 TOGARAM2Q6ZUX3 1019 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 COPS6Q7L5N1 327 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ADAT2Q7Z6V5 191 aaKnown RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 WDR60Q8WVS4 1066 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 TINF2Q9BSI4 451 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 RPAP3Q9H6T3 665 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ORC4O43929 436 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 ANP32DO95626 131 aa13.67□□□□□ -0.22
COL6A3-206ENST00000409809 SERPINH1P50454 418 aaKnown RBP13.67□□□□□ -0.22
COL6A3-206ENST00000409809 TFDP2Q14188 446 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms