RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ACBD5Q5T8D3 534 aaPredicted RBP12.85□□□□□ -0.35
HMGB1-206ENST00000405805 ZNF571Q7Z3V5 609 aaPredicted RBP12.85□□□□□ -0.35
HMGB1-206ENST00000405805 SPZ1Q9BXG8 430 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 PICK1Q9NRD5 415 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 SSU72P8A0A1W2PR75 194 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 TCP10L2B9ZVM9 353 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 ZBTB5O15062 677 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 PSMC2P35998 433 aaKnown RBP12.85□□□□□ -0.35
HMGB1-206ENST00000405805 PLVAPQ9BX97 442 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 AMNQ9BXJ7 453 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 METTL14Q9HCE5 456 aaKnown RBP12.85□□□□□ -0.35
HMGB1-206ENST00000405805 SCAF8Q9UPN6 1271 aaKnown RBP12.85□□□□□ -0.35
HMGB1-206ENST00000405805 RASGRF2O14827 1237 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 THAP12O43422 761 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 FERP16591 822 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 AARSP49588 968 aaKnown RBP eCLIP12.85□□□□□ -0.35
HMGB1-206ENST00000405805 C2CD6Q53TS8 623 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 ZNF653Q96CK0 615 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 JMJD4Q9H9V9 463 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 SIK3Q9Y2K2 1263 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 SH3BP1Q9Y3L3 701 aa12.85□□□□□ -0.35
HMGB1-206ENST00000405805 WDR91A4D1P6 747 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 MMP10P09238 476 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 GNAT1P11488 350 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 AMIGO3Q86WK7 504 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CEP70Q8NHQ1 597 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 GSDMBQ8TAX9 411 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SLC35G2Q8TBE7 412 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 C1orf54Q8WWF1 131 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 MMTAG2Q9BU76 263 aaKnown RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 NAGPAQ9UK23 515 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 BZW2Q9Y6E2 419 aaKnown RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 KCNMA1Q12791 1236 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CCDC92Q53HC0 331 aaPredicted RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SLC10A5Q5PT55 438 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 KIF2BQ8N4N8 673 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CYP2W1Q8TAV3 490 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 TBC1D16Q8TBP0 767 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 LRRC15Q8TF66 581 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CCDC77Q9BR77 488 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SCOCQ9UIL1 159 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 TRPC5Q9UL62 973 aaPredicted RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 MARF1Q9Y4F3 1742 aaKnown RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 ZBTB39O15060 712 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 MED24O75448 989 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 FTLP02792 175 aaPredicted RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CUL1Q13616 776 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 GPATCH4Q5T3I0 446 aaKnown RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SLFN12Q8IYM2 578 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 PROM2Q8N271 834 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SLC40A1Q9NP59 571 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 A0A1W2PQJ5 194 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 ATF7P17544 494 aaPredicted RBP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CASP5P51878 434 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.84□□□□□ -0.35
HMGB1-206ENST00000405805 EPC2Q52LR7 807 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 AADACL2Q6P093 401 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CCDC13Q8IYE1 715 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SCFD1Q8WVM8 642 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 SEC16BQ96JE7 1060 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 BTBD6Q96KE9 485 aa12.84□□□□□ -0.35
HMGB1-206ENST00000405805 CNTNAP4Q9C0A0 1308 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 CCNHP51946 323 aaPredicted RBP12.83□□□□□ -0.36
HMGB1-206ENST00000405805 CFAP157Q5JU67 520 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 FAM102BQ5T8I3 360 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 RC3H1Q5TC82 1133 aaKnown RBP12.83□□□□□ -0.36
HMGB1-206ENST00000405805 DYDC2Q96IM9 177 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 PRMT1Q99873 361 aaKnown RBP12.83□□□□□ -0.36
HMGB1-206ENST00000405805 VPS37BQ9H9H4 285 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.83□□□□□ -0.36
HMGB1-206ENST00000405805 IRF6O14896 467 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 BAG2O95816 211 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 POTEJP0CG39 1038 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 CHN1P15882 459 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 ECM1Q16610 540 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 TAOK1Q7L7X3 1001 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 SLC30A5Q8TAD4 765 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 UBXN6Q9BZV1 441 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 STMN4Q9H169 189 aaPredicted RBP12.83□□□□□ -0.36
HMGB1-206ENST00000405805 ACTR5Q9H9F9 607 aaPredicted RBP12.83□□□□□ -0.36
HMGB1-206ENST00000405805 CYP11B2P19099 503 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 LMNB1P20700 586 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF449Q6P9G9 518 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 KRT27Q7Z3Y8 459 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 HAUS1Q96CS2 278 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 POLLQ9UGP5 575 aa12.83□□□□□ -0.36
HMGB1-206ENST00000405805 AKAP3O75969 853 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 FLT3P36888 993 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 PMS2P54278 862 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 USP4Q13107 963 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 SLC29A2Q14542 456 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 SGO2Q562F6 1265 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 GBP7Q8N8V2 638 aaPredicted RBP12.82□□□□□ -0.36
HMGB1-206ENST00000405805 KAT2BQ92831 832 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 BCAS3Q9H6U6 928 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 PARVGQ9HBI0 331 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 HOMER3Q9NSC5 361 aa12.82□□□□□ -0.36
HMGB1-206ENST00000405805 PAIP2BQ9ULR5 123 aaKnown RBP12.82□□□□□ -0.36
HMGB1-206ENST00000405805 TRPM3Q9HCF6 1732 aaPredicted RBP12.82□□□□□ -0.36
HMGB1-206ENST00000405805 GH2P01242 217 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms