RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 GRIN1Q05586 938 aa10.23□□□□□ -0.77
SMAD9-203ENST00000399275 ADRM1Q16186 407 aa10.23□□□□□ -0.77
SMAD9-203ENST00000399275 USPL1Q5W0Q7 1092 aa10.23□□□□□ -0.77
SMAD9-203ENST00000399275 KCNB2Q92953 911 aa10.23□□□□□ -0.77
SMAD9-203ENST00000399275 PANK4Q9NVE7 773 aa10.23□□□□□ -0.77
SMAD9-203ENST00000399275 WBP11Q9Y2W2 641 aaKnown RBP10.23□□□□□ -0.77
SMAD9-203ENST00000399275 AP4S1Q9Y587 144 aa10.23□□□□□ -0.77
SMAD9-203ENST00000399275 SNTNA6NMZ2 147 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PSMD14O00487 310 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 XPO1O14980 1071 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TEX33O43247 280 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 ADD2P35612 726 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PLTPP55058 493 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PPP2R5DQ14738 602 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 LRRC24Q50LG9 513 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PLEKHA7Q6IQ23 1121 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PEX5LQ8IYB4 626 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 VTI1AQ96AJ9 217 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 OLFM1Q99784 485 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PARVGQ9HBI0 331 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 LIMA1Q9UHB6 759 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 ARL2BPQ9Y2Y0 163 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 ABCC3O15438 1527 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 C16orf96A6NNT2 1141 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 H3BRJ5 948 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 SEC24DO94855 1032 aaPredicted RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 INHBAP08476 426 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PTGS2P35354 604 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 RCAN1P53805 252 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 STK4Q13043 487 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 NR5A1Q13285 461 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 KRT72Q14CN4 511 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 LRRC36Q1X8D7 754 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 ZNF804AQ7Z570 1209 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 CROCCP3Q8IVE0 287 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TRIM59Q8IWR1 403 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 NDST4Q9H3R1 872 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PCDHA4Q9UN74 947 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 KIAA1210Q9ULL0 1709 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 FAM170AA1A519 330 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 GSTA4O15217 222 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TRIM49P0CI25 452 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TRIM49CP0CI26 452 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 CA4P22748 312 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 PPIDQ08752 370 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 CBX3Q13185 183 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 SPARCL1Q14515 664 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 MTF1Q14872 753 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TSC22D1Q15714 1073 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 CCDC153Q494R4 210 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 THEMIS2Q5TEJ8 643 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 ZNF554Q86TJ5 538 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 METTL16Q86W50 562 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 ZNF180Q9UJW8 692 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 LDHBP07195 334 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TECP42680 631 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 EXOSC10Q01780 885 aaKnown RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 KRT17Q04695 432 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 DEPDC1Q5TB30 811 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 RFX8Q6ZV50 586 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 CLEC4MQ9H2X3 399 aaPredicted RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TRIM45Q9H8W5 580 aaPredicted RBP10.22□□□□□ -0.77
SMAD9-203ENST00000399275 TBC1D7Q9P0N9 293 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 STK17AQ9UEE5 414 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 USP6P35125 1406 aa10.22□□□□□ -0.77
SMAD9-203ENST00000399275 SMCO2A6NFE2 343 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 ZCCHC18P0CG32 403 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 PGM1P36871 562 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 NUP107P57740 925 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 LRRC63Q05C16 580 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 ADAM9Q13443 819 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 TCIRG1Q13488 830 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 FAM26FQ5R3K3 315 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 FAM9CQ8IZT9 166 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 SMCR8Q8TEV9 937 aaPredicted RBP10.21□□□□□ -0.77
SMAD9-203ENST00000399275 TAF1DQ9H5J8 278 aaPredicted RBP10.21□□□□□ -0.77
SMAD9-203ENST00000399275 HDAC6Q9UBN7 1215 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 SOX13Q9UN79 622 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 IFNB1P01574 187 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 PPM1FP49593 454 aaPredicted RBP10.21□□□□□ -0.77
SMAD9-203ENST00000399275 RPS6KA3P51812 740 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 MAGOHP61326 146 aaKnown RBP10.21□□□□□ -0.77
SMAD9-203ENST00000399275 EXOC3L4Q17RC7 722 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 PROSER3Q2NL68 480 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 NEK10Q6ZWH5 1172 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 SH3BP5LQ7L8J4 393 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 MAGOHBQ96A72 148 aaKnown RBP10.21□□□□□ -0.77
SMAD9-203ENST00000399275 MMS19Q96T76 1030 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 FANCEQ9HB96 536 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 TBK1Q9UHD2 729 aa10.21□□□□□ -0.77
SMAD9-203ENST00000399275 N4BP1O75113 896 aaKnown RBP10.21□□□□□ -0.78
SMAD9-203ENST00000399275 PRR29P0C7W0 189 aa10.21□□□□□ -0.78
SMAD9-203ENST00000399275 ABCB4P21439 1286 aa10.21□□□□□ -0.78
SMAD9-203ENST00000399275 HMOX2P30519 316 aa10.21□□□□□ -0.78
SMAD9-203ENST00000399275 FKBP3Q00688 224 aaKnown RBP10.21□□□□□ -0.78
SMAD9-203ENST00000399275 DR1Q01658 176 aa10.21□□□□□ -0.78
SMAD9-203ENST00000399275 RALGDSQ12967 914 aa10.21□□□□□ -0.78
SMAD9-203ENST00000399275 RASGRF1Q13972 1273 aa10.21□□□□□ -0.78
SMAD9-203ENST00000399275 PARP10Q53GL7 1025 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms