RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 USP38Q8NB14 1042 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 ATG4AQ8WYN0 398 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 RILPQ96NA2 401 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 DUSP9Q99956 384 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 MAGED2Q9UNF1 606 aaPredicted RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 PDS5AQ29RF7 1337 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 H0YIN7 160 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 KIF1CO43896 1103 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 BAG3O95817 575 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 ALDH3A1P30838 453 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 GNAQP50148 359 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 SCNN1DP51172 638 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 ALDH5A1P51649 535 aaPredicted RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 BSPRYQ5W0U4 402 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 PPP1R21Q6ZMI0 780 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.51□□□□□ -0.89
RTN4-206ENST00000394611 BICD1Q96G01 975 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 POP1Q99575 1024 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 DDX50Q9BQ39 737 aaKnown RBP9.51□□□□□ -0.89
RTN4-206ENST00000394611 RHBDL2Q9NX52 303 aa9.51□□□□□ -0.89
RTN4-206ENST00000394611 TMEM120BA0PK00 339 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 KLRG2A4D1S0 409 aaPredicted RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 CFBP00751 764 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 GNAT1P11488 350 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 CACNB3P54284 484 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 ANKRD20A3Q5VUR7 823 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 TMEM154Q6P9G4 183 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 KRT25Q7Z3Z0 450 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 NLGN2Q8NFZ4 835 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 RNF217Q8TC41 542 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 SNRNP27Q8WVK2 155 aaKnown RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 SMC6Q96SB8 1091 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 CCDC77Q9BR77 488 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 ACP6Q9NPH0 428 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 PLCB1Q9NQ66 1216 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 MARCOQ9UEW3 520 aaPredicted RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 PLAGL2Q9UPG8 496 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 ITIH6Q6UXX5 1313 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 COASYQ13057 564 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 C10orf76Q5T2E6 689 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 APTXQ7Z2E3 356 aaKnown RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 LRRC43Q8N309 656 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 KIAA0895Q8NCT3 520 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 ANKS1AQ92625 1134 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 RBM17Q96I25 401 aaKnown RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 BHMT2Q9H2M3 363 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 CTDP1Q9Y5B0 961 aaPredicted RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 CACNA1SQ13698 1873 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 USP17L5A8MUK1 530 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 PFDN1O60925 122 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 CDC37Q16543 378 aaPredicted RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 PFKFB3Q16875 520 aaPredicted RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 PRUNE1Q86TP1 453 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 PASD1Q8IV76 773 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 UBL4BQ8N7F7 174 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 SLC30A5Q8TAD4 765 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 HOOK2Q96ED9 719 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 FHDC1Q9C0D6 1143 aaPredicted RBP9.5□□□□□ -0.89
RTN4-206ENST00000394611 SMYD3Q9H7B4 428 aa9.5□□□□□ -0.89
RTN4-206ENST00000394611 CCDC195A0A1B0GUA6 201 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 A0A1W2PQC6 194 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 RASA4BC9J798 803 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 RASA4O43374 803 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 CALCAP01258 141 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 RPS8P62241 208 aaKnown RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 BTKQ06187 659 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 SGO2Q562F6 1265 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 PPP4R3AQ6IN85 833 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 DPP8Q6V1X1 898 aaPredicted RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 SFR1Q86XK3 245 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 GIMAP8Q8ND71 665 aaPredicted RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 STMN4Q9H169 189 aaPredicted RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 GRID2IPA4D2P6 1211 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 TRPA1O75762 1119 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 NPR1P16066 1061 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 BRD2P25440 801 aaKnown RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 GALCP54803 685 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 COG7P83436 770 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 TROAPQ12815 778 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 TMED1Q13445 227 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 CTTNQ14247 550 aaKnown RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 DAB2IPQ5VWQ8 1189 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 MAML1Q92585 1016 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 MASTLQ96GX5 879 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.49□□□□□ -0.897e-8■■□□□ 13.4
RTN4-206ENST00000394611 TMBIM4Q9HC24 238 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 UBE2TQ9NPD8 197 aaPredicted RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 KCNQ5Q9NR82 932 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 PCDHA6Q9UN73 950 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 TRPC6Q9Y210 931 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 FRMD4BQ9Y2L6 1034 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 PCDHA8Q9Y5H6 950 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 PDE4DIPQ5VU43 2346 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 RIC1Q4ADV7 1423 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 CREB1P16220 341 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 KCNA3P22001 575 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 ELF3P78545 371 aaPredicted RBP9.49□□□□□ -0.89
RTN4-206ENST00000394611 CETN1Q12798 172 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 GRAPQ13588 217 aa9.49□□□□□ -0.89
RTN4-206ENST00000394611 PIP4K2CQ8TBX8 421 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms