RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 SMAD4Q13485 552 aaKnown RBP18.61■□□□□ 0.57
PTPRK-208ENST00000392449 ADHFE1Q8IWW8 467 aa18.61■□□□□ 0.57
PTPRK-208ENST00000392449 HELQQ8TDG4 1101 aa18.61■□□□□ 0.57
PTPRK-208ENST00000392449 NLRP4Q96MN2 994 aa18.61■□□□□ 0.57
PTPRK-208ENST00000392449 TLE6Q9H808 572 aa18.61■□□□□ 0.57
PTPRK-208ENST00000392449 FAM50BQ9Y247 325 aa18.61■□□□□ 0.57
PTPRK-208ENST00000392449 TRIOO75962 3097 aa18.61■□□□□ 0.57
PTPRK-208ENST00000392449 MAFO75444 373 aaPredicted RBP18.6■□□□□ 0.57
PTPRK-208ENST00000392449 LAG3P18627 525 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 ANAPC15P60006 121 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 PLPP4Q5VZY2 271 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 PPP4R3AQ6IN85 833 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 ZNF598Q86UK7 904 aaKnown RBP18.6■□□□□ 0.57
PTPRK-208ENST00000392449 ABI1Q8IZP0 508 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 LPPQ93052 612 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 PPP2R3CQ969Q6 453 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 GCOM2Q9BZD3 368 aaPredicted RBP18.6■□□□□ 0.57
PTPRK-208ENST00000392449 RGL1Q9NZL6 768 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 ARID2Q68CP9 1835 aa18.6■□□□□ 0.57
PTPRK-208ENST00000392449 A0A0U1RQF3 1178 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 C19orf67A6NJJ6 358 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 MEIS3P2A8K0S8 358 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 WNT7AO00755 349 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 ZBTB39O15060 712 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 JAK2O60674 1132 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 GPR37L1O60883 481 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 SEC24BO95487 1268 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 XBP1P17861 261 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 QARSP47897 775 aaKnown RBP18.59■□□□□ 0.57
PTPRK-208ENST00000392449 NCAPH2Q6IBW4 605 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 KCNT2Q6UVM3 1135 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 FAM43BQ6ZT52 329 aaPredicted RBP18.59■□□□□ 0.57
PTPRK-208ENST00000392449 LRRC43Q8N309 656 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 TNFRSF25Q93038 417 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 GTF3C6Q969F1 213 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 FAM20AQ96MK3 541 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 CYP26B1Q9NR63 512 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 PRKAG3Q9UGI9 489 aa18.59■□□□□ 0.57
PTPRK-208ENST00000392449 FSCN2O14926 492 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 GCFC2P16383 781 aaKnown RBP18.58■□□□□ 0.57
PTPRK-208ENST00000392449 DNM2P50570 870 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 CYP4A11Q02928 519 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 UBE3AQ05086 875 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 ZNF710Q8N1W2 664 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 SMRP1Q8NCR6 262 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 NSUN7Q8NE18 718 aaKnown RBP18.58■□□□□ 0.57
PTPRK-208ENST00000392449 TMEM143Q96AN5 459 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 DYDC2Q96IM9 177 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 LXNQ9BS40 222 aa18.58■□□□□ 0.57
PTPRK-208ENST00000392449 PIN4Q9Y237 131 aaKnown RBP18.58■□□□□ 0.57
PTPRK-208ENST00000392449 HIDE1A8MVS5 230 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 NT5C1B-RDH14C9J2C7 533 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 HOXA2O43364 376 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 KRT2P35908 639 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 SPIRE1Q08AE8 756 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 ST3GAL1Q11201 340 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 CTTNQ14247 550 aaKnown RBP18.58■□□□□ 0.56
PTPRK-208ENST00000392449 ANKRD1Q15327 319 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 TWF2Q6IBS0 349 aaKnown RBP18.58■□□□□ 0.56
PTPRK-208ENST00000392449 MRPS27Q92552 414 aaKnown RBP18.58■□□□□ 0.56
PTPRK-208ENST00000392449 CEP170P1Q96L14 293 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 ZNF558Q96NG5 402 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 TCF25Q9BQ70 676 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 IFT122Q9HBG6 1241 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 ENTPD7Q9NQZ7 604 aa18.58■□□□□ 0.56
PTPRK-208ENST00000392449 MARCH6O60337 910 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 EYA4O95677 639 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 P4HBP07237 508 aaKnown RBP18.57■□□□□ 0.56
PTPRK-208ENST00000392449 SFPQP23246 707 aaKnown RBP eCLIP18.57■□□□□ 0.566e-7■□□□□ 10.4
PTPRK-208ENST00000392449 PHKA2P46019 1235 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 NEK4P51957 841 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 PLCB3Q01970 1234 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 DUSP6Q16828 381 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 LLGL2Q6P1M3 1020 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 ZNF410Q86VK4 478 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 MINDY3Q9H8M7 445 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 DACT1Q9NYF0 836 aa18.57■□□□□ 0.56
PTPRK-208ENST00000392449 USP15Q9Y4E8 981 aaPredicted RBP18.57■□□□□ 0.56
PTPRK-208ENST00000392449 BTBD18B2RXH4 712 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 DCXO43602 365 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 SRGAP2CP0DJJ0 459 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 YWHABP31946 246 aaKnown RBP18.56■□□□□ 0.56
PTPRK-208ENST00000392449 POLGP54098 1239 aaPredicted RBP18.56■□□□□ 0.56
PTPRK-208ENST00000392449 COASYQ13057 564 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 EPHA7Q15375 998 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 CSPP1Q1MSJ5 1256 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 CATSPER4Q7RTX7 472 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 TMEM173Q86WV6 379 aaPredicted RBP18.56■□□□□ 0.56
PTPRK-208ENST00000392449 PRPF31Q8WWY3 499 aaKnown RBP18.56■□□□□ 0.56
PTPRK-208ENST00000392449 SLC7A3Q8WY07 619 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 WASF1Q92558 559 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 APOL5Q9BWW9 433 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 MUTYHQ9UIF7 546 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 COL4A3BPQ9Y5P4 624 aa18.56■□□□□ 0.56
PTPRK-208ENST00000392449 TBX3O15119 743 aa18.55■□□□□ 0.56
PTPRK-208ENST00000392449 EOMESO95936 686 aa18.55■□□□□ 0.56
PTPRK-208ENST00000392449 ALADP13716 330 aa18.55■□□□□ 0.56
PTPRK-208ENST00000392449 SLC39A11Q8N1S5 342 aa18.55■□□□□ 0.56
PTPRK-208ENST00000392449 DHX33Q9H6R0 707 aaKnown RBP18.55■□□□□ 0.56
PTPRK-208ENST00000392449 CHST12Q9NRB3 414 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms