RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 RAD23BP54727 409 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 ARL4CP56559 192 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 TCP10Q12799 353 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 TRIP13Q15645 432 aaPredicted RBP9.4□□□□□ -0.91
PCDH9-202ENST00000377865 MEI1Q5TIA1 1274 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 MAP7D3Q8IWC1 876 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 SYNE4Q8N205 404 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 SLC35G2Q8TBE7 412 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 SLC24A3Q9HC58 644 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 CAPN6Q9Y6Q1 641 aa9.4□□□□□ -0.91
PCDH9-202ENST00000377865 TDP2O95551 362 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 SCTRP47872 440 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 SEC24CP53992 1094 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 POLE2P56282 527 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 FOXP4Q8IVH2 680 aaPredicted RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ERP44Q9BS26 406 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 YIPF3Q9GZM5 350 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 PCIF1Q9H4Z3 704 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 CD248Q9HCU0 757 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 PPP1R1BQ9UD71 204 aaPredicted RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 CNOT8Q9UFF9 292 aaKnown RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RICTORQ6R327 1708 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 SPAG7O75391 227 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ADCY1Q08828 1119 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ZNF211Q13398 564 aaPredicted RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 CASC4Q6P4E1 433 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 SRRM1Q8IYB3 904 aaKnown RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ZNF34Q8IZ26 560 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 PYROXD1Q8WU10 500 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RAPGEF5Q92565 580 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 DDX27Q96GQ7 796 aaKnown RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 CSRNP1Q96S65 589 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 TRIM51Q9BSJ1 452 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ATP6V0A4Q9HBG4 840 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 INTS13Q9NVM9 706 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RNF8O76064 485 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 BMP3P12645 472 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 KLRC1P26715 233 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 SLC8A3P57103 927 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RCN2Q14257 317 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 JAMLQ86YT9 394 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 XRN1Q8IZH2 1706 aaKnown RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 TRAIPQ9BWF2 469 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 KMT5AQ9NQR1 393 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RIMBP3CA6NJZ7 1639 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RIMBP3BA6NNM3 1639 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 RIMBP3Q9UFD9 1639 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 C1orf167Q5SNV9 1468 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 GMNNO75496 209 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 FTLP02792 175 aaPredicted RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 FGFR4P22455 802 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 KRT17Q04695 432 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 DNAJC24Q6P3W2 148 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ENOSF1Q7L5Y1 443 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 TTC13Q8NBP0 860 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 TPCN2Q8NHX9 752 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 ANAPC7Q9UJX3 599 aa9.39□□□□□ -0.91
PCDH9-202ENST00000377865 THRAP3Q9Y2W1 955 aaKnown RBP9.39□□□□□ -0.91
PCDH9-202ENST00000377865 FAM170AA1A519 330 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 O00370 1275 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TBX3O15119 743 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 EYA4O95677 639 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TMOD1P28289 359 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 GALCP54803 685 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 SEC23AQ15436 765 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TTBK2Q6IQ55 1244 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 ZC3H18Q86VM9 953 aaKnown RBP9.38□□□□□ -0.91
PCDH9-202ENST00000377865 OR2W6PQ8NHA6 318 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 NUDCD1Q96RS6 583 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 IFT122Q9HBG6 1241 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TUFT1Q9NNX1 390 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 UVRAGQ9P2Y5 699 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 ATRNO75882 1429 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TCRBV5S4A2TA0A5A2 114 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 ASAP2O43150 1006 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 CPP00450 1065 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 ACTN1P12814 892 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 PRDX5P30044 214 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 ARHGEF16Q5VV41 709 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 GLYCTKQ8IVS8 523 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 CEP95Q96GE4 821 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TFR2Q9UP52 801 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 EIF3DO15371 548 aaKnown RBP eCLIP9.38□□□□□ -0.91
PCDH9-202ENST00000377865 MED7O43513 233 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 CREB3O43889 395 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 VAMP7P51809 220 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 COPS2P61201 443 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 SP4Q02446 784 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 DEUP1Q05D60 604 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 TROAPQ12815 778 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 CTTNQ14247 550 aaKnown RBP9.38□□□□□ -0.91
PCDH9-202ENST00000377865 GNPTABQ3T906 1256 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 KLHDC7AQ5VTJ3 777 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 BTNL9Q6UXG8 535 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 FAM84BQ96KN1 310 aaPredicted RBP9.38□□□□□ -0.91
PCDH9-202ENST00000377865 SERPINB12Q96P63 405 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 DONSONQ9NYP3 566 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 KDM6AO15550 1401 aaPredicted RBP9.38□□□□□ -0.91
PCDH9-202ENST00000377865 AP2B1P63010 937 aa9.38□□□□□ -0.91
PCDH9-202ENST00000377865 XXYLT1Q8NBI6 393 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms